RNA id: TCONS_00021780


Basic Information

Item Value
RNA id TCONS_00021780
length 881
lncRNA type sense_over
GC content 0.55
exon number 5
gene id XLOC_010417
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6182501 ~ 6205790 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTTGTTCAGtTGCTGTATTCTCCTATCGAGAACATCCAGCGTGTGGCTGCAGGAGTGCTGTGTGAACTGGCTCAGGATAAGGAGGCGGCAGAAGCCATCGAGGCAGAAGGAGCCACTGCTCCACTCACAGAGCTCCTGCACTCCAGAAACGAGGGAGTCGCCACGTACGCTGCTGCAGTTCTGTTCCGCATGTCTGAGGATAAGCCCCAGGACTACAAGAAGCGACTGTCTGTGGAGCTCACCAGCTCTCTGTTCAGAACTGAGCCCATGACCTGGAACGAGACTGGAGATCTAGGGCTGGATATCGGTGCACAGGGAGAGCCTCTGGGCTACAGACAGGACGACCCAAGCTACCGCTCCTTCCATTCCGGAGGTTATGGGCAGGACGCCATGGGAATGGACCCCATGATGGAGCACGAGATGGCCGGGCACCACCCGGGCCCTGATTACCCCGTAGACGGCCTGCCTGACCTCGGCCACACCCAGGACCTGATCGACGGCCTCCCGCCAGGCGACAGCAATCAGCTGGCCTGGTTTGACACCGATCTGTAAATACAATGACTTTTTAGGTGAGGCACGCCAATGGTTGCTTTGATCTGTGCGCACCGTGTGTGGGAGAGTAGAGTGTAAAGCAGCACGCACCCAGTAGCAGAACTAATCTGAGCTGCTTCTCAATTCATTACacgagcgagtgtgtgtgtgtgtttaatgggATTCTAATCTGTTGTTTGtcccccccctctctctttctctgctgcAGCTGTATCGTCTGATCTGAATGAACCTGCATTGTGATTTTGGCCTGTAGAGTTGCTGAGCGGGCTCAAGAGAGAGTGGGCTAGTTTCTCTGAAAGTGCCTGACACACTAATACAAGCTGA

Function

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0048262 determination of dorsal/ventral asymmetry biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0001889 liver development biological_process
GO:0000578 embryonic axis specification biological_process
GO:0007398 ectoderm development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0060026 convergent extension biological_process
GO:0007155 cell adhesion biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005902 microvillus cellular_component
GO:0005912 adherens junction cellular_component
GO:0005915 zonula adherens cellular_component
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0014704 intercalated disc cellular_component
GO:0016020 membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035257 nuclear hormone receptor binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0019903 protein phosphatase binding molecular_function
GO:0045294 alpha-catenin binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04510 Focal adhesion
ko04520 Adherens junction
ko04550 Signaling pathways regulating pluripotency of stem cells
ko04670 Leukocyte transendothelial migration
ko04919 Thyroid hormone signaling pathway
ko04916 Melanogenesis
ko05200 Pathways in cancer
ko05205 Proteoglycans in cancer
ko05210 Colorectal cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05216 Thyroid cancer
ko05217 Basal cell carcinoma
ko05215 Prostate cancer
ko05213 Endometrial cancer
ko05224 Breast cancer
ko05160 Hepatitis C
ko05163 Human cytomegalovirus infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05165 Human papillomavirus infection
ko05132 Salmonella infection
ko05100 Bacterial invasion of epithelial cells
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05418 Fluid shear stress and atherosclerosis
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko04934 Cushing syndrome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022087 lncRNA downstream 397133 5746308 ~ 5786042 (-) False XLOC_010414
TCONS_00022088 lncRNA downstream 397172 5776049 ~ 5786003 (-) True XLOC_010414
TCONS_00022086 lncRNA downstream 539437 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00022085 lncRNA downstream 594555 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022084 lncRNA downstream 594609 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00022089 lncRNA upstream 59056 6248023 ~ 6249246 (-) True XLOC_010418
TCONS_00022091 lncRNA upstream 102206 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022090 lncRNA upstream 102206 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022093 lncRNA upstream 102206 6291173 ~ 6351690 (-) False XLOC_010419
TCONS_00022092 lncRNA upstream 102206 6291173 ~ 6351690 (-) True XLOC_010419
TCONS_00020470 mRNA downstream 309309 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA downstream 338294 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020469 mRNA downstream 461789 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020468 mRNA downstream 511313 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020467 mRNA downstream 570695 5607138 ~ 5612480 (-) True XLOC_010410
TCONS_00020476 mRNA upstream 167493 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020477 mRNA upstream 197974 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020478 mRNA upstream 206344 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA upstream 206980 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020489 mRNA upstream 614503 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020473 other downstream 312486 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 325194 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1075758 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1121546 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1463790 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 639585 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 1031025 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1504914 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1505827 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 2098804 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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