RNA id: TCONS_00001681


Basic Information

Item Value
RNA id TCONS_00001681
length 2163
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_001048
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10824351 ~ 11075405 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGAAAAGCTCCGCCTCGTCTGAACCGCTTTGGCTGAGGGAGATCGCAGGGAAGTCGGATGCTTTTTCCACAGTAGAGAGGGAACACCGCGGAGGTGATTCGCCCCCAAAACAACACCGAGCCATCGGgatttttaaaaaaggaacaCTTTGGATTCGGCGTTTTCTGGGAGGCGAGATGAGGGAGAACTTGAGAAAtcaccAGACCCAAACAACATGTTGGGACCACCCAAAGATGGCAGAACTCTACCAGTCATTAGCGGATCTCAACAACGTGCGGTTCTCGGCATACAGGACGGCAATGAAGCTCAGACGAATGCAGAAAGCCCTCTGTTTGGATCTTCTGAGCATGCCTGCAGCCTGTGAAGCCTTTGAGCAGCACAATCTCAAACAGAACGAGCAGTTCATGGACATCGTGCAGGTGATCAACTGTCTGACCAGCATCTACGACCGTCTGGAGCAGCAGCACAGCAGCCTGGTCAACGTGCCTCTCTGTGTGGACATGTGTCTCAACTGGCTGCTCAACGTTTACGATACAGGACGAGCTGGGAAGATTCGTACCCTATCCTTCAAAACAGGAATAATCTCTTTGTGCAAAGCTCACCTTGAAGATAAGTACAGATTTTTATTTCGAGAGGTGGCCAGTGCCACAGGCTTCTGTGACCAGCGGCGCCTCGGCCTCCTCCTGCATGATGCCATTCAGATCCCCAGGCAGCTGGGTGAAGTGGCGTCTTTCGGAGGGAGCAATATTGAGCCCAGTGTGCGCAGCTGCTTTCAGTTCGCCAATAACAAACCGGAGTTAGAGGCTTCAGTCTTCCTGGACTGGATGCGTTTAGAACCTCAGTCGATGGTTTGGCTTCCTGTCCTTCACCGTGTAGCGGCCGCTGAGACAGCAAAGCACCAGGCTAAATGCAACATTTGTAAGGAATGTCCTATTATTGGCTTCAGGTACCGAAGTTTAAAGCACTTTAACTATGATATCTGCCAAAGCTGCTTCTTTTCTGGCAGAGTGGCCAAAGGTCACAAGATGCAGTACCCTATGGTTGAATATTGCACACCGACGACGTCAGGAGAGGATGTGAGAGACTTTGCCAAGGTGTTAAAGAACAAGTTCAGGACAAAGCGCTATTTTGCCAAGCACCCTCGCATGGGTTACCTTCCCGTCCAGACCATCCTTGAAGGAGACAACATGGAGACGCCTGCATCTTCCCCTCAACTCTCCCATGACGACACCCACTCTCGCATCGAGCATTACGCTAGCAGGCTAGCTGAAATGGAGAACCGAAATGGCTCGTATGTGAATGACAATGTATCGCCCAATGAAAGCATGGATGATGAGCATCTGCTGATCCAGCACTACTGCCAGAGTCTGAATCAAGGCTCTCCTCTCAGCCAGCCGCAGAGCCCCGCTCAGATCCTCATCTCAATGGAGACTGAAGAGAAGGGAGAGCTGGAGAGAGTGCTCAATGATCTGGAGCAGGAAAACAGGAAGCTGCAAGCGGAGTACGATCGTCTGAAAAAGGCACACGATCACAAGGGTCTGTCACCGTTGCCTTCACCTCCACAGATGCTTCCGGTGTCGCCTCAAAGTCCACGCGACGCAGAACTAATCGCAGAAGCCAAACTACTGCGGCAACACAAGGGACGATTGGAGGCAAGAATGCAAATCCTGGAGGATCACAACAAGCAGCTGGAATCGCAGCTTACACGCCTAAGACAGTTACTCGAGCAGACTGAGTCCAAGGTGAATGGCACTGCCCTGTCCTCACCCTCCACTGCCTCTCCGAGATCTGACACCAGCCTGGCCTCACTGCGTGTGGCCGCAAGCCAAACCACAGAGACCATGGgtgatGATGAGCTGTCCAGTCCCACCCAGGATGCAAGCACTGGATTAGAAGACGTCATCGAGCAGCTCAACAACTCCTTCCCTCACAGCCAAGGAGGCGGACGGCTAAATCCATGAGAGGTCCCAATGTGGGAAGTCTTTTCCACATGGTTGATAACATTGGACATGCCATGGAGTCGCTGGTTCATGTAATAACAGAGGAGCAGGATTTAGACTGAAGACGTCTTCTCCTCGTTGCATGCTTTTGTAGTGTCAACAACTGGACCGGATATGTTTACAATGGGGAATatcaataaaaatctatttttctgAAGGA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0007525 somatic muscle development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0016203 muscle attachment biological_process
GO:0045214 sarcomere organization biological_process
GO:0061053 somite development biological_process
GO:0042383 sarcolemma cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko05416 Viral myocarditis
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-010426-1 Predicted to enable actin filament binding activity and zinc ion binding activity. Acts upstream of or within several processes, including sarcomere organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including axial mesoderm; axis; chordo neural hinge; musculature system; and somite. Used to study Duchenne muscular dystrophy and muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin).

Ensembl:

ensembl_id ENSDART00000009886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003342 lncRNA downstream 84212 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 142504 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001651 lncRNA downstream 843843 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 843843 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 905841 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00003343 lncRNA upstream 51385 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 585451 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003345 lncRNA upstream 807818 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 826204 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001712 lncRNA upstream 1054822 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00001678 mRNA downstream 3069 10809604 ~ 10821584 (-) False XLOC_001047
TCONS_00001679 mRNA downstream 3069 10814208 ~ 10821584 (-) True XLOC_001047
TCONS_00001677 mRNA downstream 18028 10783670 ~ 10806625 (-) True XLOC_001046
TCONS_00001675 mRNA downstream 155217 10667447 ~ 10669436 (-) True XLOC_001043
TCONS_00001674 mRNA downstream 177346 10643541 ~ 10647307 (-) True XLOC_001042
TCONS_00001694 mRNA upstream 201618 11086957 ~ 11104805 (-) True XLOC_001052
TCONS_00001695 mRNA upstream 239407 11124746 ~ 11372458 (-) False XLOC_001053
TCONS_00001696 mRNA upstream 239763 11125102 ~ 11291324 (-) False XLOC_001053
TCONS_00001697 mRNA upstream 454695 11340034 ~ 11372456 (-) False XLOC_001053
TCONS_00001698 mRNA upstream 454698 11340037 ~ 11519934 (-) True XLOC_001053
TCONS_00001669 other downstream 204194 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001662 other downstream 551928 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001661 other downstream 753222 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001660 other downstream 753231 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001657 other downstream 756120 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001691 other upstream 7983 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001692 other upstream 15727 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001693 other upstream 177185 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001733 other upstream 1790648 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 2897591 13782930 ~ 13783046 (-) True XLOC_001082

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014469 True 1848 mRNA 0.55 15 CM030128.1 15089695 ~ 15137536 (+)