RNA id: TCONS_00001692


Basic Information

Item Value
RNA id TCONS_00001692
length 696
RNA type processed_transcript
GC content 0.51
exon number 5
gene id XLOC_001048
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10824351 ~ 11075405 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGCTCATGTCCCGTTTTCTTTGCATCATACACGTCCACATGGTGGGGAATTAAAGGACTGACAGTCAGGCGGGCTGCGTTCCGTTCGTTTGATGCCAGTCAATCACCGGATATGTTGCACAGGAAGACGTATCACGTTAAGGATCTCCAGGCAGAGATTGATGCTCACCGGGAGACGTACCATTCATTAGATGAAAACGGACATCGTATTGTGTCGTCTCTGGAGGGAACGGACAATGCTGTGGTGCTACAAAAACGGCTTGATGACATGGGGCAGCGCTGGCATGAGTTGTGCAACAAAGTTATGAGTATAAGGCCCTATCTAGATGCCGGCGTTGATCAGTGGAAACACTTGCACATGTCCTTACAAGAGCTGCTCAACTGGCTGCAGCTGAAGAGGGAAGAGCTGGAGAAGCAGAAGCCAGTAGGGGGCGACGTGCCGACCGTTCACCAACAACTCCTCACGCACAAGGCTTTCAGAAGAGAGCTGGGTGCCAAAGAACCTGTAATCAATGGAACTCTCGACAATGCGAAAACCTTCCTTGCTGAGATGCCTCGTGAGGGCCTGAAACAGAGACCTGGACAAAAAGATGTAAGTCCTGAGGAGCGGGTTCAAAACGTGGGCCGCATATTGCGTAAAGAAGTGGAGGATGTAACGGTGCGATGGAAGAATCTGGGTGCAGCTTCTGTGGACT

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0007525 somatic muscle development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0016203 muscle attachment biological_process
GO:0045214 sarcomere organization biological_process
GO:0061053 somite development biological_process
GO:0042383 sarcolemma cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko05416 Viral myocarditis
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-010426-1 Predicted to enable actin filament binding activity and zinc ion binding activity. Acts upstream of or within several processes, including sarcomere organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including axial mesoderm; axis; chordo neural hinge; musculature system; and somite. Used to study Duchenne muscular dystrophy and muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin).

Ensembl:

ensembl_id ENSDART00000102923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001690 lncRNA downstream 15728 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003342 lncRNA downstream 160625 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 218917 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001651 lncRNA downstream 920256 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00003343 lncRNA upstream 28103 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 562169 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003345 lncRNA upstream 784536 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 802922 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001712 lncRNA upstream 1031540 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00001681 mRNA downstream 15727 10824653 ~ 10885339 (-) False XLOC_001048
TCONS_00001688 mRNA downstream 15797 10853315 ~ 10885269 (-) False XLOC_001048
TCONS_00001685 mRNA downstream 53313 10824751 ~ 10847753 (-) False XLOC_001048
TCONS_00001687 mRNA downstream 59718 10826296 ~ 10841348 (-) False XLOC_001048
TCONS_00001678 mRNA downstream 79482 10809604 ~ 10821584 (-) False XLOC_001047
TCONS_00001694 mRNA upstream 178336 11086957 ~ 11104805 (-) True XLOC_001052
TCONS_00001695 mRNA upstream 216125 11124746 ~ 11372458 (-) False XLOC_001053
TCONS_00001696 mRNA upstream 216481 11125102 ~ 11291324 (-) False XLOC_001053
TCONS_00001697 mRNA upstream 431413 11340034 ~ 11372456 (-) False XLOC_001053
TCONS_00001698 mRNA upstream 431416 11340037 ~ 11519934 (-) True XLOC_001053
TCONS_00001689 other downstream 30825 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 51115 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001683 other downstream 59688 10824660 ~ 10841378 (-) False XLOC_001048
TCONS_00001669 other downstream 280607 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001662 other downstream 628341 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001693 other upstream 153903 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001733 other upstream 1767366 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 2874309 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 2967184 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 3165686 14074307 ~ 14074375 (-) True XLOC_001085

Expression Profile

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