RNA id: TCONS_00003344


Basic Information

Item Value
RNA id TCONS_00003344
length 467
lncRNA type intronic
GC content 0.42
exon number 2
gene id XLOC_001054
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11470790 ~ 11517353 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtggaccagtccctcctgcagcaaaacagccccacaacatgatgctgcctcCCCCATACTTCACAATTGGGATGTTGTTCTTAGGCTTGAGGGCTTTGATGGTGGTTGTGGAATCAGGGACCTGCATGTGGAGAGAGAGGGGAGGAGGAGGGGGGAAACTTTCAGAGACGCTCCAACTGTTTGTTTTTGAGATCTTCCAAACTAGGACATCTCCGTGCTTCTAGTTCAGCTCTCCGGAGAGCACAGAGAATCTCAAACATGTCAATTTCACTCAATATTGGAAGTCGATGGTTTTCCTCAACAATTCTGCAATCTCATTATTATTGGACTCTGGAGTTGACTGTTTTAGGCAAGGGGAATTTGTTTCTTGAATACTTTGTTTCAGTAAATATATTTGAATGAcaaatgctgtatttatactgaTGCATAAACTGCAATAGTTGCAAAACctggttaaattaaaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003343 lncRNA downstream 532975 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00001690 lncRNA downstream 585452 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003342 lncRNA downstream 730349 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 788641 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001651 lncRNA downstream 1489980 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00003345 lncRNA upstream 175804 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 194190 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001712 lncRNA upstream 422808 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00001715 lncRNA upstream 547803 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00003347 lncRNA upstream 588294 12105647 ~ 12109216 (-) False XLOC_001068
TCONS_00001695 mRNA downstream 98332 11124746 ~ 11372458 (-) False XLOC_001053
TCONS_00001697 mRNA downstream 98334 11340034 ~ 11372456 (-) False XLOC_001053
TCONS_00001696 mRNA downstream 179466 11125102 ~ 11291324 (-) False XLOC_001053
TCONS_00001694 mRNA downstream 365985 11086957 ~ 11104805 (-) True XLOC_001052
TCONS_00001680 mRNA downstream 395385 10824351 ~ 11075405 (-) False XLOC_001048
TCONS_00001699 mRNA upstream 78445 11595798 ~ 11596829 (-) True XLOC_001055
TCONS_00001700 mRNA upstream 88657 11606010 ~ 11607062 (-) True XLOC_001056
TCONS_00001701 mRNA upstream 97920 11615273 ~ 11616295 (-) True XLOC_001057
TCONS_00001702 mRNA upstream 108899 11626252 ~ 11627289 (-) False XLOC_001058
TCONS_00001703 mRNA upstream 108899 11626252 ~ 11631634 (-) True XLOC_001058
TCONS_00001693 other downstream 408143 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 562169 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 566904 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 600549 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 620839 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 1158634 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 2265577 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 2358452 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 2556954 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 2998092 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

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