Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00021318 |
| length | 767 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 4 |
| gene id | XLOC_010893 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 36974523 ~ 36979597 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005829 | cytosol | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | cellular_component |
| id | description |
|---|---|
| ko03041 | Spliceosome |
| id | description |
|---|---|
| ZDB-GENE-030131-4482 | Predicted to enable metal ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48). |
| ensembl_id | ENSDART00000168599 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021825 | lncRNA | downstream | 17877 | 36956750 ~ 36959179 (-) | True | XLOC_010892 |
| TCONS_00021316 | lncRNA | downstream | 35103 | 36939727 ~ 36941953 (-) | True | XLOC_010891 |
| TCONS_00021307 | lncRNA | downstream | 192083 | 36780659 ~ 36784973 (-) | True | XLOC_010888 |
| TCONS_00022211 | lncRNA | downstream | 366420 | 36605758 ~ 36610636 (-) | False | XLOC_010885 |
| TCONS_00022212 | lncRNA | downstream | 366924 | 36608095 ~ 36610132 (-) | False | XLOC_010885 |
| TCONS_00021322 | lncRNA | upstream | 188873 | 37168470 ~ 37225747 (-) | False | XLOC_010895 |
| TCONS_00021326 | lncRNA | upstream | 981674 | 37961271 ~ 37964259 (-) | False | XLOC_010896 |
| TCONS_00021332 | lncRNA | upstream | 1135036 | 38114633 ~ 38117969 (-) | True | XLOC_010898 |
| TCONS_00022213 | lncRNA | upstream | 1219316 | 38198913 ~ 38341804 (-) | True | XLOC_010899 |
| TCONS_00022214 | lncRNA | upstream | 1406211 | 38385808 ~ 38394558 (-) | False | XLOC_010901 |
| TCONS_00021314 | mRNA | downstream | 31156 | 36934563 ~ 36945900 (-) | False | XLOC_010891 |
| TCONS_00021315 | mRNA | downstream | 31327 | 36937118 ~ 36945729 (-) | False | XLOC_010891 |
| TCONS_00021313 | mRNA | downstream | 31709 | 36934183 ~ 36945347 (-) | False | XLOC_010891 |
| TCONS_00021312 | mRNA | downstream | 71267 | 36901549 ~ 36905789 (-) | True | XLOC_010890 |
| TCONS_00021309 | mRNA | downstream | 142423 | 36807924 ~ 36834633 (-) | False | XLOC_010889 |
| TCONS_00021320 | mRNA | upstream | 186975 | 37166572 ~ 37470042 (-) | False | XLOC_010895 |
| TCONS_00021321 | mRNA | upstream | 188665 | 37168262 ~ 37372613 (-) | False | XLOC_010895 |
| TCONS_00021323 | mRNA | upstream | 221567 | 37201164 ~ 37415797 (-) | True | XLOC_010895 |
| TCONS_00021324 | mRNA | upstream | 967745 | 37947342 ~ 37964325 (-) | False | XLOC_010896 |
| TCONS_00021325 | mRNA | upstream | 968733 | 37948330 ~ 38001040 (-) | False | XLOC_010896 |
| TCONS_00021311 | other | downstream | 147871 | 36814223 ~ 36829185 (-) | True | XLOC_010889 |
| TCONS_00021301 | other | downstream | 366420 | 36608041 ~ 36610636 (-) | False | XLOC_010885 |
| TCONS_00021302 | other | downstream | 366924 | 36608694 ~ 36610132 (-) | True | XLOC_010885 |
| TCONS_00021294 | other | downstream | 1001899 | 35945384 ~ 35975157 (-) | True | XLOC_010876 |
| TCONS_00021291 | other | downstream | 1152348 | 35821991 ~ 35824708 (-) | True | XLOC_010875 |
| TCONS_00021319 | other | upstream | 177408 | 37157005 ~ 37157121 (-) | True | XLOC_010894 |
| TCONS_00021337 | other | upstream | 1582930 | 38562527 ~ 38562644 (-) | True | XLOC_010904 |
| TCONS_00021338 | other | upstream | 1598832 | 38578429 ~ 38583862 (-) | False | XLOC_010903 |
| TCONS_00021340 | other | upstream | 1603169 | 38582766 ~ 38629131 (-) | False | XLOC_010903 |
| TCONS_00021341 | other | upstream | 1646959 | 38626556 ~ 38631969 (-) | True | XLOC_010903 |
