RNA id: TCONS_00022279


Basic Information

Item Value
RNA id TCONS_00022279
length 2868
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_011100
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53474458 ~ 53481394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATACATTTGATCAAATGTTTCATGTGACGCTAGTCAATTGCAAATATAATTTCATGTAAATAATGACATACATGATgacaaaaacattcattcaaacAAATCAATTTAATGCAAACAAAAAGTTGTGTTGTTTAATACACAACATTAACTATGCAGCAGCACGTTTCTGCAGTAATTCCCTTATGAATATTCATTgcttaattaaaatacataaaccTCATATTAAGCAACAAAGACAGCAACAAATGCAGCTCAGTGACATTAATGTGTCATTAATGAACCATAATAAAGGCACATTAACACTGAAAACAGTGCAGctcagggcttttattttgaaaaatgtagtaAGAAACATAGAAGTCACCTAGTCAGTAACTCTTTTGACAGATTTGAAAACTGAACAAAACAGACACAGTTACAGTAAAGCACagaataaatattcatattaaatcCATCATTTCTTGATTCTATCTGGCGTTTTAATGCACTCTATctgcactttttaaaataaataatggcatacaTGATGACAACTTTATTCgaacaaattaatttaatgcGAACATAAAACGTACTGCATCGTGTTGtttaatacacaaatacttgCATATTAATTATGTTACAGCACATATTTCTGTGATGAATATTCAGTGGTTCATTTACATACATTAACATATTAAGTAGCAAAGACAGCAACAAATCCAGCTCAATGGCATTAATGAACCATAATAAAGGCAAGTTAATACTGAAGAACAGTGTTCAGTGCAGctcagggcttttattttgaaaagaaaattaGCTATAAATATAAGTCACCTTTTCAGTAACTCTTCTGACAGATTTGCAAACAGATTTTCACCTTTTTACAGcataaattatcaaaattatATGTTGTTATGACAGAAATGACACCATAAAGGATATTTActgatattttccaaataatgcaTCATGTCTGATTTTCTTTCTGCGCTTCATATTAAATATGTTCATTAttaatgctaataataacataGAAAACCTTATTATAACTTCATTTATTGTTATACATCATGCTGTAAATTCATTTTGCCATTAACCTTTTCACAGCATAAATTATCAACattgaaaaaatctaattttacgtgtcaatgaaaataaataacactaTAAAGGTCTTTCCTGATGTTTTCTAAATGATGTATGCTGATTAATTTCCTTTCTGCAATAcatatcatatttttattatcattattattacttttaatgcTAATTGCATCGAAAatgtataattacatttttttatgcatgtATTATTTTGCCAAAATCTAAATTTGTTGCGATGACAAAAACAACACTATAAAGGTCTTTCCcgatattttccaaatgatgcatCAAGTTTGATTTCCTTTCTGCAATACACATCGaatactatcattattattaatgctaataACATAGAAAACCTTATTATAACGTCATTTATTGTTATACATCATGCTGTAAATTTATTTTGCCATTAACCTTTTCACAGCATAAATTATCAAcactaaaaacaaatctaattttacgtgtcaatgaaaataaataacactttaaaggTCTTTCCTGATGATTTCTACACGATGCATCCTGTTTGATAAGCTTTAGCTtttgtttctgtaataaatattgaATACTTTTACTATGATCAATGCAAATTATGTAaagcattatcattattattcttgCGCACTGCTGTTATTGCAGTATTTCATCTCTAAATCCAAACATGACCCAGATTTTGAGCATTTCACAGCATGAATACTCTAAATAAGTCAAATTTGATGTTGCAATGACAGAATCAACACTCTAAAAGGTTTTCCCCGTAATATTCTCCACATCGATGCATTATGCTTGAGTTCCcttctgcaataaatattaaatactacaCATAAAAGATGAAGATGAGTCTCTGCGTCTCTCACTGCATGCGCTCTGTCTGCGTCTGGTATTGGCCGAATGTGGCGGCGGTGGCTGCGGGCGCTGGAGATGCAAGTGGCTGCTGCATGTAGCCGTAGCCGGTGCCGGCGGTGGTGACGTAGCCTGCGGTGGCGGCGGGCGAAGCGGCGTACGGATACTGCTCATACGCTGCGGCTGCTGCTGCGGCAGTGGTGTACTGCGCATACGCCGCGCTGCTGTAGTCCAGATACGGAGTCGCAGCGGCTGCGGGAGAGCTGGAGGACGCCTGAACGTGAGGAATCACCACACTGGGCTGAACAAACGCCTGCGGGTACACATAATGAGCAGGGATCCTGAGAGACACAGAGAGCAgacgttaaacacacacacacacacacacactgcgggaGATCAGCAGGTTATGCAGATCCACACTGAACCACATGCTGGAAACACAGCGCTGATGATGCAGCGTTACAGGCGCCATCGAATATAAAAAGACAAAGAGAACGTTTAGATCCATACAGTAGTGTTCTTTTAGGACTTTTAGGGGTGGGTCTATTAGTCCTTTAGGTCAGGACTCTCAGTCCTTTAGgaaggagctatcagtcctttagggaggagctatcagtcctttagggaggagctatcagtcctttagggaggagctatcagtcctttagggaggagctatcagcccTTTAGGgaagagctatcagtcctttagggaggcgctatcagtcctttagggaggagctatcagtcctttagggaggagctatcagtcctttagggaagagctatcagtcctttagggaggagctatcagtcctttagggaagagctatcagtcctttagggaggagctatcagtcctttagggaggagctatcagcccTTTAGGgaagagctatcagtcctttagggaggagctatcagtcttttag

Function

GO:

id name namespace
GO:0043034 costamere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021632 lncRNA downstream 219676 53247940 ~ 53254782 (-) True XLOC_011099
TCONS_00021624 lncRNA downstream 749097 52724580 ~ 52725361 (-) False XLOC_011094
TCONS_00021848 lncRNA downstream 786013 52685610 ~ 52688445 (-) True XLOC_011093
TCONS_00021847 lncRNA downstream 788141 52684758 ~ 52686317 (-) False XLOC_011093
TCONS_00021846 lncRNA downstream 911550 52557028 ~ 52562908 (-) True XLOC_011092
TCONS_00021633 lncRNA upstream 104474 53585707 ~ 53586356 (-) False XLOC_011101
TCONS_00022286 lncRNA upstream 104474 53585707 ~ 53637122 (-) False XLOC_011101
TCONS_00022287 lncRNA upstream 153849 53635082 ~ 53637109 (-) True XLOC_011101
TCONS_00021849 lncRNA upstream 159013 53640246 ~ 53645906 (-) False XLOC_011102
TCONS_00022288 lncRNA upstream 169669 53650902 ~ 53652469 (-) False XLOC_011103
TCONS_00021631 mRNA downstream 215049 53247831 ~ 53259409 (-) False XLOC_011099
TCONS_00021629 mRNA downstream 507593 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA downstream 507647 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021628 mRNA downstream 558210 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021627 mRNA downstream 594717 52875093 ~ 52879741 (-) True XLOC_011096
TCONS_00021636 mRNA upstream 252481 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021637 mRNA upstream 436182 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021638 mRNA upstream 538223 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021639 mRNA upstream 685699 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021640 mRNA upstream 685699 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021617 other downstream 1526677 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 1718952 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 2513096 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 2539152 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 2835672 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021634 other upstream 161587 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 169669 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 1284268 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 1304504 54785737 ~ 54786983 (-) False XLOC_011122