RNA id: TCONS_00022287


Basic Information

Item Value
RNA id TCONS_00022287
length 2028
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_011101
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53585707 ~ 53637122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCAAACAGTTTCTTGATTTTTAATAGAAACGGCTAAATGAAATAACATCACATGCAAAGTTGCAAATGCAGTATTTTGAGTGCACTATGAAGGataattgtttataattgttCATTTTGGTGACGCTTCATTTATTATTGCAGAAACCTAAAAACAGCTCATTCCTGTATCCCTTCAGACTGCCAGGAGAGCATCATGAtcataactttaataataataataataataactgacatGATTTGTACATTCTCTGCTGAAGCTCCAGCTGCAGTGAGGACAGTAAATACAGTAAGGCATCATTCATTCAAAGCGTTCAGAAATGATGCAGGAAAAACTATACTGTATACAAAAAAACCCAACTAAATATGGCACGGCTTCAGTGCTGGAGACGCTACTGGTCCCACAGAAAGATCCAGAACACAGTCAGTTCTTCAGTTTGAGGAAGACCATGATTTACTGTCCATTAAAGCACCGCTGACGATGAAGAAGACATCAGGCTCCGTCTCAAATCCTCCAGTTCACCACACTTGACCAGCAGCTGACGCACAGATGAagtgtttgtcttgttttccaCAAATAACATGATGTACAGTTGAGTCGGAATTATTCGCTCGGCTGTGAgttttctttgtcaaatatttcctaaatgatgttgaacagactcaggaaatgttcacagtatgtctgataatatctgttcttctggagaaaatctgatttgttttatttcggctagaataaaagcagttcttaattgttttaaagccattttaaggtcaatattattagcccccttcagcaatattagttttggattgtctccaggacaaacttttatgattagaaatgtgctgaaaaaatctctccaaCAAACCGAAATTGGAGGAATAAATATTCacacgggctaataattctggctttagctgtctgtgtgcgtgtttgagtgtACTGACAAAAATGGTtcattaaatttataataaaaataaaaatgtaaggtaagtggttgtaaacaatttatattggctggaaatgaacaaattaagtgcagtaatattcaacttaatatgtttgtttatatatatatatatatttcccatataaattgtttgcaactacgTACCTCAAAAATTCTAGcacctaaacaaacaaacacacacacagaaaccctGAGCTAAAAAGCATTCTAGCGctcttattaaaataataataaactactgTTTTTTTGTTGGTATTAAAAATAGTTTGCCGCTCATCAGTAAAATCACTTTTGTGTGAAACACTTTCTGAAAACAGCAGCTCAATCTGTACATTTCAACATGAGACAGATGCGGGAGATTTTGTAAGGTGTGAATCATTTATAAACAAATCGCAGAAAAAGGTCAAATAAGCAGTGCTTGATGATTCCCccgagtcaaacagtattcaggttagagaaattgtataattaaatgtaaaagaacCGTATATAGTCTTCATTATTATAACTATTCAGTGAAATGAatcttcattaaagttacaaatgttgtacttttttagcctgaatgctttaaactcttgaagtttcacaaactaataaaCACAAACGACCTGATCTCGAACTCTCCTCACATGCTCATgacaggcgggagccctgggctcaattattcccgagctcagggttctctcccgggacagcatgccaaacctgctatgatcatcaagcaatatctaagtgtgaactcttgaaatgtcttTAAAACACATGCTAATGATAAAGATTCCCTCTGTTATAGTTATACTCTGTAATAACTCCACAGATCTCATGCGTTCTCACCTGTTGTGTTGATCAACTGTAATCCCGACTCAACACTGAGATTTGACTATCGTGGACACACACAATGCGACATCAATGCTGAAACCATACATTGAGCAGCCCAAACATATACAGCTGAATCAGAATTATTCGGCCTGTtcatttttcccaatttctgattaacagagagcagatttcttcaacacatttctaatcataatagtttaataact

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021633 lncRNA downstream 48726 53585707 ~ 53586356 (-) False XLOC_011101
TCONS_00022285 lncRNA downstream 153688 53474458 ~ 53481394 (-) False XLOC_011100
TCONS_00022284 lncRNA downstream 153688 53474458 ~ 53481394 (-) False XLOC_011100
TCONS_00022283 lncRNA downstream 153688 53474458 ~ 53481394 (-) True XLOC_011100
TCONS_00022282 lncRNA downstream 153845 53474458 ~ 53481237 (-) False XLOC_011100
TCONS_00021849 lncRNA upstream 3137 53640246 ~ 53645906 (-) False XLOC_011102
TCONS_00022288 lncRNA upstream 13793 53650902 ~ 53652469 (-) False XLOC_011103
TCONS_00022289 lncRNA upstream 49205 53686314 ~ 53699443 (-) True XLOC_011104
TCONS_00021850 lncRNA upstream 229185 53866294 ~ 53867992 (-) True XLOC_011106
TCONS_00022290 lncRNA upstream 274798 53911907 ~ 53979683 (-) False XLOC_011107
TCONS_00021631 mRNA downstream 375673 53247831 ~ 53259409 (-) False XLOC_011099
TCONS_00021629 mRNA downstream 668217 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA downstream 668271 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021628 mRNA downstream 718834 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021627 mRNA downstream 755341 52875093 ~ 52879741 (-) True XLOC_011096
TCONS_00021636 mRNA upstream 96605 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021637 mRNA upstream 280306 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021638 mRNA upstream 382347 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021639 mRNA upstream 529823 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021640 mRNA upstream 529823 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021617 other downstream 1687301 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 1879576 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 2673720 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 2699776 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 2996296 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021634 other upstream 5711 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 13793 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 1128392 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 1148628 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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