Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025499 |
| length | 1574 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 3 |
| gene id | XLOC_012777 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 20566817 ~ 20573129 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:2001238 | positive regulation of extrinsic apoptotic signaling pathway | biological_process |
| GO:2001244 | positive regulation of intrinsic apoptotic signaling pathway | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0008637 | apoptotic mitochondrial changes | biological_process |
| GO:0090200 | positive regulation of release of cytochrome c from mitochondria | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-050419-35 | Acts upstream of or within positive regulation of apoptotic process. Predicted to be located in mitochondrial outer membrane. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including brain; digestive system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human BID (BH3 interacting domain death agonist). |
| ensembl_id | ENSDART00000182585 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027105 | lncRNA | upstream | 190607 | 20328119 ~ 20376935 (+) | False | XLOC_012772 |
| TCONS_00027106 | lncRNA | upstream | 238891 | 20328125 ~ 20328651 (+) | True | XLOC_012772 |
| TCONS_00027104 | lncRNA | upstream | 242321 | 20316443 ~ 20325221 (+) | True | XLOC_012771 |
| TCONS_00025481 | lncRNA | upstream | 359413 | 20089381 ~ 20208129 (+) | False | XLOC_012769 |
| TCONS_00027103 | lncRNA | upstream | 476200 | 20089658 ~ 20091342 (+) | True | XLOC_012769 |
| TCONS_00027107 | lncRNA | downstream | 590295 | 21163424 ~ 21169748 (+) | False | XLOC_012786 |
| TCONS_00026897 | lncRNA | downstream | 591697 | 21164826 ~ 21169079 (+) | False | XLOC_012786 |
| TCONS_00027108 | lncRNA | downstream | 592052 | 21165181 ~ 21169748 (+) | True | XLOC_012786 |
| TCONS_00025515 | lncRNA | downstream | 820237 | 21393366 ~ 21394377 (+) | True | XLOC_012788 |
| TCONS_00025517 | lncRNA | downstream | 835674 | 21408803 ~ 21492635 (+) | True | XLOC_012789 |
| TCONS_00025493 | mRNA | upstream | 1560 | 20560616 ~ 20565982 (+) | False | XLOC_012776 |
| TCONS_00025494 | mRNA | upstream | 1560 | 20560763 ~ 20565982 (+) | False | XLOC_012776 |
| TCONS_00025495 | mRNA | upstream | 1560 | 20560767 ~ 20565982 (+) | False | XLOC_012776 |
| TCONS_00025496 | mRNA | upstream | 1560 | 20560776 ~ 20565982 (+) | True | XLOC_012776 |
| TCONS_00025492 | mRNA | upstream | 6422 | 20560442 ~ 20561120 (+) | False | XLOC_012776 |
| TCONS_00025500 | mRNA | downstream | 103961 | 20677090 ~ 20722810 (+) | True | XLOC_012778 |
| TCONS_00025501 | mRNA | downstream | 252246 | 20825375 ~ 20853376 (+) | False | XLOC_012779 |
| TCONS_00025502 | mRNA | downstream | 252289 | 20825418 ~ 20828121 (+) | False | XLOC_012779 |
| TCONS_00025503 | mRNA | downstream | 252289 | 20825418 ~ 20828449 (+) | False | XLOC_012779 |
| TCONS_00025504 | mRNA | downstream | 265657 | 20838786 ~ 20853748 (+) | True | XLOC_012779 |
| TCONS_00025461 | other | upstream | 1443463 | 19123332 ~ 19124079 (+) | True | XLOC_012754 |
| TCONS_00025449 | other | upstream | 1739057 | 18827249 ~ 18828485 (+) | True | XLOC_012745 |
| TCONS_00025448 | other | upstream | 1767490 | 18799118 ~ 18800052 (+) | True | XLOC_012744 |
| TCONS_00025447 | other | upstream | 1796648 | 18770075 ~ 18770894 (+) | True | XLOC_012742 |
| TCONS_00025446 | other | upstream | 1833183 | 18733425 ~ 18734359 (+) | False | XLOC_012742 |
| TCONS_00025507 | other | downstream | 448570 | 21021699 ~ 21023601 (+) | True | XLOC_012781 |
| TCONS_00025513 | other | downstream | 618536 | 21191665 ~ 21191784 (+) | True | XLOC_012787 |
| TCONS_00025547 | other | downstream | 2614290 | 23187419 ~ 23249572 (+) | False | XLOC_012803 |
| TCONS_00025560 | other | downstream | 2899017 | 23472146 ~ 23472260 (+) | True | XLOC_012806 |
| TCONS_00025562 | other | downstream | 3904397 | 24477526 ~ 24483172 (+) | False | XLOC_012809 |
