Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025515 |
| length | 851 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 2 |
| gene id | XLOC_012788 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 21273749 ~ 21401401 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | description |
|---|---|
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-050419-219 | Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 5. Orthologous to human HYDIN (HYDIN axonemal central pair apparatus protein). |
| ensembl_id | ENSDART00000145701 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027107 | lncRNA | upstream | 223618 | 21163424 ~ 21169748 (+) | False | XLOC_012786 |
| TCONS_00027108 | lncRNA | upstream | 223618 | 21165181 ~ 21169748 (+) | True | XLOC_012786 |
| TCONS_00026897 | lncRNA | upstream | 224287 | 21164826 ~ 21169079 (+) | False | XLOC_012786 |
| TCONS_00025498 | lncRNA | upstream | 821032 | 20566846 ~ 20572334 (+) | False | XLOC_012777 |
| TCONS_00027105 | lncRNA | upstream | 1016431 | 20328119 ~ 20376935 (+) | False | XLOC_012772 |
| TCONS_00025517 | lncRNA | downstream | 14426 | 21408803 ~ 21492635 (+) | True | XLOC_012789 |
| TCONS_00027109 | lncRNA | downstream | 75259 | 21469636 ~ 21473364 (+) | False | XLOC_012790 |
| TCONS_00027110 | lncRNA | downstream | 76071 | 21470448 ~ 21473364 (+) | True | XLOC_012790 |
| TCONS_00025519 | lncRNA | downstream | 683767 | 22078144 ~ 22081753 (+) | True | XLOC_012792 |
| TCONS_00026898 | lncRNA | downstream | 705242 | 22099619 ~ 22100228 (+) | True | XLOC_012793 |
| TCONS_00025511 | mRNA | upstream | 247992 | 21122818 ~ 21145374 (+) | False | XLOC_012785 |
| TCONS_00025512 | mRNA | upstream | 249926 | 21122960 ~ 21143440 (+) | True | XLOC_012785 |
| TCONS_00025510 | mRNA | upstream | 273148 | 21113216 ~ 21120218 (+) | True | XLOC_012784 |
| TCONS_00025509 | mRNA | upstream | 317360 | 21071023 ~ 21076006 (+) | True | XLOC_012783 |
| TCONS_00025508 | mRNA | upstream | 329987 | 21061216 ~ 21063379 (+) | True | XLOC_012782 |
| TCONS_00025516 | mRNA | downstream | 14417 | 21408794 ~ 21620816 (+) | False | XLOC_012789 |
| TCONS_00025518 | mRNA | downstream | 557174 | 21951551 ~ 22020509 (+) | True | XLOC_012791 |
| TCONS_00025520 | mRNA | downstream | 715002 | 22109379 ~ 22116378 (+) | True | XLOC_012794 |
| TCONS_00025521 | mRNA | downstream | 728695 | 22123072 ~ 22127985 (+) | True | XLOC_012795 |
| TCONS_00025522 | mRNA | downstream | 744547 | 22138924 ~ 22282675 (+) | False | XLOC_012796 |
| TCONS_00025513 | other | upstream | 201582 | 21191665 ~ 21191784 (+) | True | XLOC_012787 |
| TCONS_00025507 | other | upstream | 369765 | 21021699 ~ 21023601 (+) | True | XLOC_012781 |
| TCONS_00025461 | other | upstream | 2269287 | 19123332 ~ 19124079 (+) | True | XLOC_012754 |
| TCONS_00025449 | other | upstream | 2564881 | 18827249 ~ 18828485 (+) | True | XLOC_012745 |
| TCONS_00025448 | other | upstream | 2593314 | 18799118 ~ 18800052 (+) | True | XLOC_012744 |
| TCONS_00025547 | other | downstream | 1793042 | 23187419 ~ 23249572 (+) | False | XLOC_012803 |
| TCONS_00025560 | other | downstream | 2077769 | 23472146 ~ 23472260 (+) | True | XLOC_012806 |
| TCONS_00025562 | other | downstream | 3083149 | 24477526 ~ 24483172 (+) | False | XLOC_012809 |
| TCONS_00025565 | other | downstream | 3248610 | 24642987 ~ 24643102 (+) | True | XLOC_012811 |
| TCONS_00025566 | other | downstream | 3342857 | 24737234 ~ 24739896 (+) | False | XLOC_012812 |
