RNA id: TCONS_00025661


Basic Information

Item Value
RNA id TCONS_00025661
length 4044
RNA type mRNA
GC content 0.38
exon number 8
gene id XLOC_012860
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30878196 ~ 30952282 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGATAGTGTGGGACTTTGTTATCTCACCAGCAGATGGCAGTGATGCACTGATAACTGAGTGTGGTTTGACAGAAATGGAAAAAGAAGAAACAAGAACATAACGTGTTATACATGCTCTTGTCCTGTCTTGTCTATCATTACAATTACCTAATTAAATTAAGGTCCGTGAACTTCTCTGCATAATGGAGCCCGTCATAAAAATTAACCAAGGGGAAACGAAATGGGATGTGCGTCATAAAGTATGGAACTACATTGAGGTGAAAAACCTTGCCAATTTTCCACGGCCTGTGCACAACAGAATTCCCAACTTCAAGGGTGCACTGGAGGCATGTAATAAGGTAGCACAATTAGAGATCTTCATCGAAAGTGCTGTAGTCAAGGTGGATCCTGACAAACCAATGGAGGGGGTTCGGTTAGCTGCTCTGAAGgcAAGAAAATCCTTACTTGTTCCAACACCTCGTCTAAGATTTGGGTTATTTAACAGAATAACTCCACCAAAAGGTGCAACTAAAGAAACACTGCGTGTTTGTTCTACTTCTCAGGGTATCAAAGAGTTCAGTGTCCCTGTTGGTTTAGATGACAAAGTTCAGGTGGATCTTGTCGTAGTTGGGTCTGTGGCTGTATCTGAAAAAGGTTACAGAATTGGGAAAGGAGAAGGTTTTGCCGACATGGAATATGCTATGATGGCATGCATGGGATCTGTGACTGAATCCACTTGGGTCATTACTGTTGTTCATGATTGCCAGGTGATGGACATTCCAGAGGAACTCATTGAAAGACATGACCTCATGGTTGACTTTATTATAACAGCAACAAGAGTCATCAAGACTGAATGTAAACACCCTAAACCACAAGGCATCATTTGGTCTATGTTACACAAAGAAGAACTGAAGAAAATACCCATTCTGAAGAAACTAAGAACACTGGAGCAGGAAGCTGGAAAAGATGTTGCTTTGAAATTAATACATGCTGGAGAGGATGAATATAGGAAATCCAAAGAGCTACAATGGCAATCTCATCCTAAAGCTGACTTGGAATTTAAATGTTTAGCTTCGAATTCTGACAGGTGTTCTGGATTTGAACCCAAATTTCCTACCACCACTGTATACCTGAGTGACATTCCTCCTGCATTACGTGTAAGTGAGTTGAAGGGCCTGCTCAGAGAACAGGAAGTTGTTCCTTTGCAAATCAGATGGCAGGGGGCAAAGCGCAAAGCTTTCCTGCTATATGCCGATTTCACTGGAGCAGAACGAGCTACCGCCATTCTTCAAAAACTCTTCATAAATGGCCACACCATACAAGCCAAGTGTGTCAGTAGTCAGAAAATGTAGTGTATTTAATACACCTTTCTGAAATGTAGACCTTCgtaataataaaattgttaaaaataattaaacattgtgTATGATTTCTAAGGGTTAAGTAGATCTGAGCTGTAAAGAAATataatattctttaaataaattcTTGCATCGATAGGGCTCATTACTGTACATGATAAtccgtgtgcgtgtgtgtgtatactgtgcAGTCCTAGATCCAACAAGCCTGACACTATTTGACTATAAAAGGGATTCTGTTTATAGAAGTAGCCATGATTTATAGTACATTTGTAACTGTTTAAGGGCCTGTTATATATGACAGAGCTTACTGCTTAAAACCCCCTTAGCTGTGCTATATACAGTTAACATCTgtcgcaaaataaaatgtttcattattgaaataaaagaatgatgCAGCGGTGGAGCGACCATCACACACTTTGCAGAGCTTGCCAGAACTGAATTAAGCTCCCATACATGTGTGCTTacatctcaaaggtaaaacaaccaGAGAAGACTCCTCTTGAAAGGGACATTTATAgacaatgcatatcaaacattaagtgGCCATtctaatatcacaataattacccTCGAAtaaagcagcgcaatcactacctGACTGCTGTAGTGTTTGTGATAAAGAGGGACGAGGCTgtatccagcttcttattcgcagcttcttattgactctattcGGTCCACCCTAAAAACAGTGAGGCTTCAGTTTTTCAGCTTCACGCTCCAGAAAATACACAACAGTTTTAATCAAAGGCTTGTTATGCGGTCCTGGCGCCATTTTGTGGATTAGACAACATCAATcgtttcaagtggtgctcgctgcagagccatttgaggagaggtgagctccagagagggggagcttaagcttgagctccaccttttttgcacttcttctacgagtgatgtcactgggggtagggttaggggtggggttggtgtacgcattaaaacagcttacaggaggaggagcgacagctcatgctccccctctctggagctcacctctcctcaaatggctctgcagcgagcaccctctcaatcGTTTTGGGTCTTCTacactatggcaggctaatggccgctgACAAgcgctctcagaaattgtaaatattttaaaatagccactattcttacaaataaactgcatagttgcaatctaaacaactacattctcgactaaaaaagcctcaaaagtacattttgttgtcaaaCAACAGAAATATTTGTCTAACTGTAGcgtctctctgcttgttgctggctgtatgtgggtggagtaatacacagaggtgaaggggGAAGAGGCCTTTGCGCGTTGTTACTTGcaaaatatcgcacagctatcaaccaatcagattcgagaaccagacagaactgttgtataatttagtgctgtcaatcgattaaaaaaattaactaattaatcacacttttttttaaatgaattgccattaatcacaattaatcacatttaaaagactgaaacttgccATTTTGgccattcaaatgtaaaattaatgtaaacgcaagacaaaaactatttacattcaaaatacaattgttaattagaatttttgtttaacttgtaacacagatttctttatgttAACAACATACTtgcaataaaccatcaagatcatggcttgacagccatatttattacagaaattaaaacacaggcatgtagtgccatttgaattttaaaacaatcaataccaataaagaaaacattgatttccatgttggattctaaatggactgcaaaaaaatgccaaaatacaggcattgcaaatatggaagttggaaaattataataataataataaagtattgaatacaaaaaattgtactcattgtaaagttgtattgctgtgagttgagaacattaattataaagtagaaactaTTTTTCTTAGTCCTCCTTTTCATTCATCCAGTTGCAAAGACAGTCCAGTCTgatgacattatcgggggacaatgtggacccagcctgatctcacaagggaGAGTCTATTCCAACCGTGTGAAAATGTAATGGGCGTGGCCAACTTGTGACCTCAATCAAGATTGACCAATAGAATAAGGTTTTTCAGAAGACCCAGCCCACTGAGCTGCAGTTTTCAACTCCCAAAACTATTCAACTTGCAAGCAAAGATTTTAGATctgcaaaaatgaaacaaaagtcAAAGCATGAGGAATGAGCACACATTTAATTGATCTGGTGGTAACTGCATAAAATGGCAATCgttcattttttgcagtgtgaatttgtttgattaaatctttttttattatttgaaatcttttattttttaattgtattgtacctaattttggtcaaaaacttctaatgtttgtttgaataataaagacTCAAAATTAACTCCAGCATTCATGGGTTCAAAACTTTACAACtcacaaacaaaacatttcaacccgcaagcaaagattctagatgTGCAATGAATGACAGCAGAAAAAAGAGCAAAAGTAATGagtgtgcaatgaaaattgtggtaaCTACATAATAggacaattgtttattttttgcaatccaaaatattttattatcattgacatacgttttttattaaacatgttttttttatttgaaatcttttattttttattcactaCATACCTAATTTCTCAttaaaacttaatatttttgattgaataataaagaaacaaatctaactcca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-3513 Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MTHFSD (methenyltetrahydrofolate synthetase domain containing).

Ensembl:

ensembl_id ENSDART00000099326

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025646 lncRNA upstream 746365 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA upstream 746365 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00025634 lncRNA upstream 1703705 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA upstream 1715082 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025618 lncRNA upstream 3263493 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00026905 lncRNA downstream 120961 31073243 ~ 31074445 (+) False XLOC_012863
TCONS_00027120 lncRNA downstream 120961 31073243 ~ 31075016 (+) False XLOC_012863
TCONS_00026906 lncRNA downstream 120980 31073262 ~ 31075016 (+) False XLOC_012863
TCONS_00026907 lncRNA downstream 121703 31073985 ~ 31074789 (+) True XLOC_012863
TCONS_00026908 lncRNA downstream 199523 31151805 ~ 31152607 (+) False XLOC_012864
TCONS_00025660 mRNA upstream 27831 30847237 ~ 30850365 (+) True XLOC_012859
TCONS_00025659 mRNA upstream 304347 30567945 ~ 30573849 (+) True XLOC_012858
TCONS_00025658 mRNA upstream 313508 30511230 ~ 30564688 (+) True XLOC_012857
TCONS_00025656 mRNA upstream 367955 30507839 ~ 30510241 (+) False XLOC_012856
TCONS_00025657 mRNA upstream 368118 30508729 ~ 30510078 (+) True XLOC_012856
TCONS_00025664 mRNA downstream 46190 30998472 ~ 31016439 (+) False XLOC_012861
TCONS_00025665 mRNA downstream 46308 30998590 ~ 31006528 (+) False XLOC_012861
TCONS_00025667 mRNA downstream 64097 31016379 ~ 31023447 (+) False XLOC_012861
TCONS_00025668 mRNA downstream 64098 31016380 ~ 31023447 (+) True XLOC_012861
TCONS_00025669 mRNA downstream 104363 31056645 ~ 31068755 (+) False XLOC_012862
TCONS_00025649 other upstream 746365 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 747644 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025637 other upstream 1702988 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025628 other upstream 2573879 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025621 other upstream 3141356 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025666 other downstream 46344 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025679 other downstream 893222 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025687 other downstream 1132657 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025732 other downstream 2490982 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 2670635 33622917 ~ 33626850 (+) False XLOC_012918

Expression Profile

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