Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025778 |
| length | 1293 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 7 |
| gene id | XLOC_012939 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 35173683 ~ 35197599 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| id | description |
|---|---|
| ZDB-GENE-070209-143 | Predicted to act upstream of or within intracellular protein transport. Is expressed in forerunner cell group. Orthologous to human CFAP45 (cilia and flagella associated protein 45). |
| ensembl_id | ENSDART00000124798 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025774 | lncRNA | upstream | 41174 | 35128751 ~ 35132688 (+) | False | XLOC_012938 |
| TCONS_00027135 | lncRNA | upstream | 98088 | 35075415 ~ 35075774 (+) | True | XLOC_012937 |
| TCONS_00027134 | lncRNA | upstream | 99225 | 35072976 ~ 35074637 (+) | True | XLOC_012936 |
| TCONS_00027131 | lncRNA | upstream | 135453 | 34942728 ~ 35038409 (+) | False | XLOC_012935 |
| TCONS_00027136 | lncRNA | downstream | 248313 | 35431006 ~ 35431848 (+) | True | XLOC_012942 |
| TCONS_00027137 | lncRNA | downstream | 958523 | 36141216 ~ 36409181 (+) | False | XLOC_012949 |
| TCONS_00026918 | lncRNA | downstream | 1216431 | 36399124 ~ 36409313 (+) | True | XLOC_012949 |
| TCONS_00026919 | lncRNA | downstream | 1701924 | 36884617 ~ 36884817 (+) | True | XLOC_012956 |
| TCONS_00027138 | lncRNA | downstream | 1760498 | 36943191 ~ 36944417 (+) | True | XLOC_012958 |
| TCONS_00025775 | mRNA | upstream | 25552 | 35130416 ~ 35148310 (+) | True | XLOC_012938 |
| TCONS_00025773 | mRNA | upstream | 30598 | 35128685 ~ 35143264 (+) | False | XLOC_012938 |
| TCONS_00025771 | mRNA | upstream | 238684 | 34861568 ~ 34935178 (+) | True | XLOC_012934 |
| TCONS_00025770 | mRNA | upstream | 337054 | 34667486 ~ 34836808 (+) | True | XLOC_012933 |
| TCONS_00025769 | mRNA | upstream | 531776 | 34601023 ~ 34642086 (+) | True | XLOC_012932 |
| TCONS_00025780 | mRNA | downstream | 46422 | 35229115 ~ 35251377 (+) | True | XLOC_012940 |
| TCONS_00025781 | mRNA | downstream | 225228 | 35407921 ~ 35413608 (+) | True | XLOC_012941 |
| TCONS_00025782 | mRNA | downstream | 560145 | 35742838 ~ 35802474 (+) | False | XLOC_012943 |
| TCONS_00025783 | mRNA | downstream | 560145 | 35742838 ~ 35802483 (+) | True | XLOC_012943 |
| TCONS_00025786 | mRNA | downstream | 660240 | 35842933 ~ 35898821 (+) | False | XLOC_012946 |
| TCONS_00025772 | other | upstream | 99239 | 35072976 ~ 35074623 (+) | False | XLOC_012936 |
| TCONS_00025746 | other | upstream | 1547012 | 33622917 ~ 33626850 (+) | False | XLOC_012918 |
| TCONS_00025732 | other | upstream | 1729605 | 33443264 ~ 33444257 (+) | True | XLOC_012909 |
| TCONS_00025687 | other | upstream | 3084918 | 32084939 ~ 32088944 (+) | True | XLOC_012873 |
| TCONS_00025679 | other | upstream | 3327306 | 31845504 ~ 31846556 (+) | True | XLOC_012868 |
| TCONS_00025784 | other | downstream | 624155 | 35806848 ~ 35806966 (+) | True | XLOC_012944 |
| TCONS_00025785 | other | downstream | 636756 | 35819449 ~ 35819563 (+) | True | XLOC_012945 |
| TCONS_00025791 | other | downstream | 958540 | 36141233 ~ 36142754 (+) | False | XLOC_012949 |
| TCONS_00025796 | other | downstream | 1447127 | 36629820 ~ 36631294 (+) | False | XLOC_012951 |
| TCONS_00025798 | other | downstream | 1450560 | 36633253 ~ 36638166 (+) | True | XLOC_012951 |
