Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025805 |
| length | 786 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 3 |
| gene id | XLOC_012953 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 36769758 ~ 36774965 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ko04657 | IL-17 signaling pathway |
| ko04380 | Osteoclast differentiation |
| ko05030 | Cocaine addiction |
| ko05031 | Amphetamine addiction |
| ko05034 | Alcoholism |
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-041114-181 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOSB (FosB proto-oncogene, AP-1 transcription factor subunit). |
| ensembl_id | ENSDART00000078151 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026918 | lncRNA | upstream | 360853 | 36399124 ~ 36409313 (+) | True | XLOC_012949 |
| TCONS_00027137 | lncRNA | upstream | 360985 | 36141216 ~ 36409181 (+) | False | XLOC_012949 |
| TCONS_00027136 | lncRNA | upstream | 1338318 | 35431006 ~ 35431848 (+) | True | XLOC_012942 |
| TCONS_00025778 | lncRNA | upstream | 1587473 | 35173862 ~ 35182693 (+) | False | XLOC_012939 |
| TCONS_00025774 | lncRNA | upstream | 1637478 | 35128751 ~ 35132688 (+) | False | XLOC_012938 |
| TCONS_00026919 | lncRNA | downstream | 111775 | 36884617 ~ 36884817 (+) | True | XLOC_012956 |
| TCONS_00027138 | lncRNA | downstream | 170349 | 36943191 ~ 36944417 (+) | True | XLOC_012958 |
| TCONS_00027139 | lncRNA | downstream | 275663 | 37048505 ~ 37053102 (+) | False | XLOC_012960 |
| TCONS_00026920 | lncRNA | downstream | 275663 | 37048505 ~ 37053102 (+) | False | XLOC_012960 |
| TCONS_00026921 | lncRNA | downstream | 275920 | 37048762 ~ 37049532 (+) | False | XLOC_012960 |
| TCONS_00025799 | mRNA | upstream | 40529 | 36664654 ~ 36729637 (+) | False | XLOC_012952 |
| TCONS_00025800 | mRNA | upstream | 40738 | 36664655 ~ 36729428 (+) | True | XLOC_012952 |
| TCONS_00025797 | mRNA | upstream | 121868 | 36631923 ~ 36648298 (+) | False | XLOC_012951 |
| TCONS_00025793 | mRNA | upstream | 136570 | 36601403 ~ 36633596 (+) | False | XLOC_012951 |
| TCONS_00025806 | mRNA | downstream | 10088 | 36782930 ~ 36800041 (+) | False | XLOC_012954 |
| TCONS_00025807 | mRNA | downstream | 14000 | 36786842 ~ 36793880 (+) | True | XLOC_012954 |
| TCONS_00025808 | mRNA | downstream | 33703 | 36806545 ~ 36865386 (+) | True | XLOC_012955 |
| TCONS_00025809 | mRNA | downstream | 141379 | 36914221 ~ 36920453 (+) | True | XLOC_012957 |
| TCONS_00025810 | mRNA | downstream | 242343 | 37015185 ~ 37201550 (+) | False | XLOC_012959 |
| TCONS_00025798 | other | upstream | 132000 | 36633253 ~ 36638166 (+) | True | XLOC_012951 |
| TCONS_00025796 | other | upstream | 138872 | 36629820 ~ 36631294 (+) | False | XLOC_012951 |
| TCONS_00025791 | other | upstream | 627412 | 36141233 ~ 36142754 (+) | False | XLOC_012949 |
| TCONS_00025785 | other | upstream | 950603 | 35819449 ~ 35819563 (+) | True | XLOC_012945 |
| TCONS_00025784 | other | upstream | 963200 | 35806848 ~ 35806966 (+) | True | XLOC_012944 |
| TCONS_00025815 | other | downstream | 487128 | 37259970 ~ 37260651 (+) | True | XLOC_012962 |
| TCONS_00025817 | other | downstream | 685604 | 37458446 ~ 37458562 (+) | True | XLOC_012965 |
| TCONS_00025818 | other | downstream | 1189936 | 37962778 ~ 37962897 (+) | True | XLOC_012966 |
| TCONS_00025819 | other | downstream | 1245059 | 38017901 ~ 38018018 (+) | True | XLOC_012967 |
| TCONS_00025838 | other | downstream | 2213078 | 38985920 ~ 38994767 (+) | False | XLOC_012976 |
