RNA id: TCONS_00027138


Basic Information

Item Value
RNA id TCONS_00027138
length 245
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_012958
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36943191 ~ 36944417 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGATCAAAGAGTACCATACTCATGGAAAGTGCCAAACCGGGTCAGAAATTAACCTTTCCATTAAGAGGCAATATCTAGCTTTAATAAATAGCTTTTAGCTTCATAGGAGTACTTTTAAGAATCATCGTATTCAATTTTTGTGGTGTCTACTGTGTcaaacattaattaatattaaaaataatcaggggtggatttaaccaataagcaaggtaagcagccgcttagggccccaggaaatccgag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026919 lncRNA upstream 58374 36884617 ~ 36884817 (+) True XLOC_012956
TCONS_00026918 lncRNA upstream 533878 36399124 ~ 36409313 (+) True XLOC_012949
TCONS_00027137 lncRNA upstream 534010 36141216 ~ 36409181 (+) False XLOC_012949
TCONS_00027136 lncRNA upstream 1511343 35431006 ~ 35431848 (+) True XLOC_012942
TCONS_00025778 lncRNA upstream 1760498 35173862 ~ 35182693 (+) False XLOC_012939
TCONS_00027139 lncRNA downstream 104088 37048505 ~ 37053102 (+) False XLOC_012960
TCONS_00026920 lncRNA downstream 104088 37048505 ~ 37053102 (+) False XLOC_012960
TCONS_00026921 lncRNA downstream 104345 37048762 ~ 37049532 (+) False XLOC_012960
TCONS_00026922 lncRNA downstream 104839 37049256 ~ 37053102 (+) True XLOC_012960
TCONS_00027140 lncRNA downstream 328098 37272515 ~ 37281071 (+) False XLOC_012963
TCONS_00025809 mRNA upstream 22738 36914221 ~ 36920453 (+) True XLOC_012957
TCONS_00025808 mRNA upstream 77805 36806545 ~ 36865386 (+) True XLOC_012955
TCONS_00025806 mRNA upstream 143150 36782930 ~ 36800041 (+) False XLOC_012954
TCONS_00025807 mRNA upstream 149311 36786842 ~ 36793880 (+) True XLOC_012954
TCONS_00025804 mRNA upstream 169473 36769785 ~ 36773718 (+) False XLOC_012953
TCONS_00025810 mRNA downstream 70768 37015185 ~ 37201550 (+) False XLOC_012959
TCONS_00025811 mRNA downstream 175679 37120096 ~ 37201550 (+) True XLOC_012959
TCONS_00025812 mRNA downstream 274723 37219140 ~ 37234696 (+) True XLOC_012961
TCONS_00025813 mRNA downstream 315383 37259800 ~ 37270740 (+) False XLOC_012962
TCONS_00025814 mRNA downstream 315384 37259801 ~ 37264238 (+) False XLOC_012962
TCONS_00025798 other upstream 305025 36633253 ~ 36638166 (+) True XLOC_012951
TCONS_00025796 other upstream 311897 36629820 ~ 36631294 (+) False XLOC_012951
TCONS_00025791 other upstream 800437 36141233 ~ 36142754 (+) False XLOC_012949
TCONS_00025785 other upstream 1123628 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025784 other upstream 1136225 35806848 ~ 35806966 (+) True XLOC_012944
TCONS_00025815 other downstream 315553 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025817 other downstream 514029 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025818 other downstream 1018361 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025819 other downstream 1073484 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025838 other downstream 2041503 38985920 ~ 38994767 (+) False XLOC_012976