RNA id: TCONS_00025816


Basic Information

Item Value
RNA id TCONS_00025816
length 862
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_012963
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 37272515 ~ 37281166 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATCGCGTTTGAATGCCTGAAAGCCGTCGACAAGGATGCCTCAAGAATAAccttaagattattttgctcatgaATTTTGTTTGGATCATGATTGTGGAACTTTAAGTTCGTTAAGAAAATGAACCTCTGCTTATGGTTGAACCTCATAACATTTTCCGGTCTGCTTTTGTCGTTGGACACAAGAGCTCATCAAGCTGAAGAAGAGCCGCTGACTGCCTCAAACATGTCCCACTATTCAACACACCTCTCCAAAGCTAAATCCATCACCCCGACTGAAGCATCTGTGAACACGCTGCACATCTCAACACCCAGCAAACACCTGATCTCTGCATCTATAGGCGTTCCTCCAGGTCACCTAACAGCAGGTGGTGGATTTGATGCGGGTAGTTTCCTCGGTGGTATGATTCTGGCCTTTATCATCATACTGGCCGTCGCTGTAGGGTACAGGCTGTTCTGCTCAAAACGGGCGATTCGCTACAGGGTCATCGAGGAACATGATGCCATCATTTAAAAATGGAGCCATCCAAGAAACCTTCATGATCTGAGGAGTTGGTTTTCATCATAATTCATATGCATATGAGGGGTGTGTTCCTGGTGTCTTCACACTGGTTTGACTTGATTTAATTGAACCAATTGAGGGTGTGATTGCTTTGTTAGCGCCACTCATTTAAATGTGTGAACTTCGCAATCCAAATGGTGCACAGACACTAATGAAATGTAGGTTTCGGTCCACTTCCAAATAAACTGTAATGCTGTTCAACAGACAATATGAATGCAGCAAggaccaaacaaaacaaaacttggtgaaacaaaaacagcaaatgaTGTCATAAGATGTGACTATAAAAGTACAGAATGCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0006412 translation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019797 procollagen-proline 3-dioxygenase activity molecular_function
GO:0031544 peptidyl-proline 3-dioxygenase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0048029 monosaccharide binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050419-69 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle. Orthologous to human TMEM123 (transmembrane protein 123).

Ensembl:

ensembl_id ENSDART00000132749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027139 lncRNA upstream 219466 37048505 ~ 37053102 (+) False XLOC_012960
TCONS_00026920 lncRNA upstream 219466 37048505 ~ 37053102 (+) False XLOC_012960
TCONS_00026922 lncRNA upstream 219466 37049256 ~ 37053102 (+) True XLOC_012960
TCONS_00026921 lncRNA upstream 223036 37048762 ~ 37049532 (+) False XLOC_012960
TCONS_00027138 lncRNA upstream 328151 36943191 ~ 36944417 (+) True XLOC_012958
TCONS_00026923 lncRNA downstream 77730 37358896 ~ 37363028 (+) True XLOC_012964
TCONS_00025822 lncRNA downstream 925123 38206289 ~ 38208100 (+) True XLOC_012968
TCONS_00026924 lncRNA downstream 1122159 38403325 ~ 38438625 (+) False XLOC_012971
TCONS_00026925 lncRNA downstream 1122159 38403325 ~ 38518803 (+) False XLOC_012971
TCONS_00027141 lncRNA downstream 1208506 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00025813 mRNA upstream 1828 37259800 ~ 37270740 (+) False XLOC_012962
TCONS_00025814 mRNA upstream 8330 37259801 ~ 37264238 (+) False XLOC_012962
TCONS_00025812 mRNA upstream 37872 37219140 ~ 37234696 (+) True XLOC_012961
TCONS_00025810 mRNA upstream 71018 37015185 ~ 37201550 (+) False XLOC_012959
TCONS_00025811 mRNA upstream 71018 37120096 ~ 37201550 (+) True XLOC_012959
TCONS_00025820 mRNA downstream 910180 38191346 ~ 38210092 (+) False XLOC_012968
TCONS_00025821 mRNA downstream 911333 38192499 ~ 38210087 (+) False XLOC_012968
TCONS_00025823 mRNA downstream 1007711 38288877 ~ 38296665 (+) True XLOC_012969
TCONS_00025826 mRNA downstream 1039873 38321039 ~ 38364462 (+) False XLOC_012970
TCONS_00025825 mRNA downstream 1039873 38321039 ~ 38364462 (+) False XLOC_012970
TCONS_00025815 other upstream 11917 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025798 other upstream 634402 36633253 ~ 36638166 (+) True XLOC_012951
TCONS_00025796 other upstream 641274 36629820 ~ 36631294 (+) False XLOC_012951
TCONS_00025791 other upstream 1129814 36141233 ~ 36142754 (+) False XLOC_012949
TCONS_00025785 other upstream 1453005 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025817 other downstream 177280 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025818 other downstream 681612 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025819 other downstream 736735 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025838 other downstream 1704754 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025852 other downstream 2455223 39736389 ~ 39736503 (+) True XLOC_012986

Expression Profile

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