RNA id: TCONS_00025820


Basic Information

Item Value
RNA id TCONS_00025820
length 2090
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_012968
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38191346 ~ 38210092 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTTAGCACGCATCAGGTAAAACAAGTTGCAAATGAACTGTCAAAGCGATTTTACCACTGACGCCTGATCGAGGAGACGCGACATCGAGTTTGTAAACACTGCTCTCAGGGGGTCTTTCAGGGATGTGGAGACCGTCACACTGTTGCTTGATTCTGGCTCTGTGGGCTTGTTTGGATGCACTGCCAGTTGCTGTGGATAAAACCAAAGTGAGCCCTCCAGCAGAGGCACAGGAACCACCTGAAAATGCAGACACCGGCTTGCACTATGATCGATATCTCAGAGAGGTTATCGATTTCCTGGAAAAGGACCCGCATTTCAGAGAGAAACTTCATAACACCGACATGGAAGATATCAAGCAAGGAAAGCTGGCGAAAGAGTTGGACTTTGTCAGCCATAATGTGCGAACGAAACTTGATGAGCTGAAGAGGCAAGAAGTGAACAGACTGCGGACCTTAATCAAAGCCAAACAAGACCTAAATGGAGAAAAAGgTATGACCGTGGACCACCAAGCACTTCTGAAACAGTTTGAGCATCTGAATCACATGAATCCACACACATTTGAGGTGGAAGATTTGGATCGCCTCATTAAATCGGCCACCAATGACCTAGAGAACTTTGACAAGGAAAGACATGAAGAGTTCAAAAGGTACGAGATGATGAAGGAACATGAACGGAGGGAACATCTTAAAACAATGAACGAGGAAGAGCGCAAAAAAGAAGAGGAACATTATGAAGAGATGAAGAAGAAACATGCAGACCATCCCAAACTCAATCATCCTGGCAGTCAAGACCAGCTGAAGGAGGTCTGGGAGGAAGCCGATGGTTTGGATCCCAATGATTTCGATCCAAAGACATTCTTCAACTTGCACGACACTAATGGTGATGGATATTTCGATGAGCAAGAGCTGGAAGCACTGTTTACCAAAGAGCTGGAGAAGATCTATGACCCCGCACAAGAAGAGGATGATATGGTGGAGATGGAGGAGGAGAGACTGAGGATGAGAGAGCATGTGATGAATGAGGTTGACACTAACAAAGACAGGCTTGTTTCACTTGAGGAATTTATTACTGCCACGAACAAGAAGGAATTTCTAGAGCCAGATGAATGGGAGACTCTAGATCAGAATCCAGTCTACACTGAAGAAGAGCTGAGAGAGTTTGAGCAGCATCTCGCTCGAGAAGAACAAGACCTGAACCTGAGGACAAATGACCTGCAGAAGCAGAGAGAGGAGCTGGAGAGACAACAGGATCAGCTCAACGCCCAGAAGATGGAACTACAGCAGGCAGTACAACACATGGAGCGGCTGAAAGCACAGAAAACAGAGCCTCCAGTGCAGCCCAAAGCTCTGTCCGCTGTGGAGATTTTACCTGGTGATGGTCAGCAGTTGTCGCAGGACCTTCCTCCACATTCTTAGCAGCTCAAGCTCTCCTGAATGTCTGTAATGTGTATGTGTGCTGTATGTAGAGTTAAACATTTCCATCCTCACATTCAATGTACTGTCTCATAGGAAATGCATTGGCATCAAACACAAAGCAACATTCAACAACCATGAATATTGAAACGTGATAAACAGAACTATCAGTGGACGGTTACACTTTTGACtatgttgttgtttgtgaggaTAGGGATTGTACTTGAATCTTGTGCTCAAAGAAAgttgattgtattttattgtttaattgtcATGTCTGATTTGCACAAACACAGCCAAACCTCATAGgataaatctttttattttagttaacgcATAATTCAGGATTCCTTTCATAAAGTACGTCCAATGCTAAACATATTCTGGTGTAAAACAAATTTGTAGAAAATATGATATCCATCCCAGGATATCAGTAATTATACCATCACTGTTTCAAGTGAATAATCAACAGCTTTTTGTGGACACTTTCATGCTAGAAATGACAGAACACTGCCTTTAAAATAGCcacaaaaatgtacacatttcTAAAACACGCAGAAATCGATAGTTCATATATGAGAACGTTTGGCTTGTTTGAGTATCCTTTGTGGGTTCCAGAGTATTATTGTcgtttaaatttctttaaaatttattaaattatgtcaGCTTCAACAA

Function

GO:

id name namespace
GO:0032094 response to food biological_process
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4775 Predicted to enable calcium ion binding activity. Acts upstream of or within response to food. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including brain; digestive system; endocrine system; heart; and yolk syncytial layer. Orthologous to human NUCB2 (nucleobindin 2).

Ensembl:

ensembl_id ENSDART00000052703

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026923 lncRNA upstream 828318 37358896 ~ 37363028 (+) True XLOC_012964
TCONS_00027140 lncRNA upstream 910275 37272515 ~ 37281071 (+) False XLOC_012963
TCONS_00027139 lncRNA upstream 1138244 37048505 ~ 37053102 (+) False XLOC_012960
TCONS_00026920 lncRNA upstream 1138244 37048505 ~ 37053102 (+) False XLOC_012960
TCONS_00026922 lncRNA upstream 1138244 37049256 ~ 37053102 (+) True XLOC_012960
TCONS_00026924 lncRNA downstream 193233 38403325 ~ 38438625 (+) False XLOC_012971
TCONS_00026925 lncRNA downstream 193233 38403325 ~ 38518803 (+) False XLOC_012971
TCONS_00027141 lncRNA downstream 279580 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00027142 lncRNA downstream 538521 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00027143 lncRNA downstream 955271 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00025816 mRNA upstream 910180 37272568 ~ 37281166 (+) True XLOC_012963
TCONS_00025813 mRNA upstream 920606 37259800 ~ 37270740 (+) False XLOC_012962
TCONS_00025814 mRNA upstream 927108 37259801 ~ 37264238 (+) False XLOC_012962
TCONS_00025812 mRNA upstream 956650 37219140 ~ 37234696 (+) True XLOC_012961
TCONS_00025810 mRNA upstream 989796 37015185 ~ 37201550 (+) False XLOC_012959
TCONS_00025823 mRNA downstream 78785 38288877 ~ 38296665 (+) True XLOC_012969
TCONS_00025826 mRNA downstream 110947 38321039 ~ 38364462 (+) False XLOC_012970
TCONS_00025825 mRNA downstream 110947 38321039 ~ 38364462 (+) False XLOC_012970
TCONS_00025824 mRNA downstream 110947 38321039 ~ 38364462 (+) True XLOC_012970
TCONS_00025827 mRNA downstream 539455 38749547 ~ 38754502 (+) True XLOC_012972
TCONS_00025819 other upstream 173328 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025818 other upstream 228449 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025817 other upstream 732784 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025815 other upstream 930695 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025798 other upstream 1553180 36633253 ~ 36638166 (+) True XLOC_012951
TCONS_00025838 other downstream 775828 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025852 other downstream 1526297 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025854 other downstream 1813680 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025863 other downstream 2256698 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025872 other downstream 2423435 40633527 ~ 40636178 (+) True XLOC_013000

Expression Profile

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