Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025825 |
| length | 2033 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_012970 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 38321039 ~ 38364462 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-140 | Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; eye; optic vesicle; pharyngeal arch; and swim bladder bud. Human ortholog(s) of this gene implicated in craniosynostosis and parietal foramina. Orthologous to human ALX4 (ALX homeobox 4). |
| ensembl_id | ENSDART00000132534 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025822 | lncRNA | upstream | 112939 | 38206289 ~ 38208100 (+) | True | XLOC_012968 |
| TCONS_00026923 | lncRNA | upstream | 958011 | 37358896 ~ 37363028 (+) | True | XLOC_012964 |
| TCONS_00027140 | lncRNA | upstream | 1039968 | 37272515 ~ 37281071 (+) | False | XLOC_012963 |
| TCONS_00026922 | lncRNA | upstream | 1267937 | 37049256 ~ 37053102 (+) | True | XLOC_012960 |
| TCONS_00026921 | lncRNA | upstream | 1271507 | 37048762 ~ 37049532 (+) | False | XLOC_012960 |
| TCONS_00026924 | lncRNA | downstream | 38863 | 38403325 ~ 38438625 (+) | False | XLOC_012971 |
| TCONS_00026925 | lncRNA | downstream | 38863 | 38403325 ~ 38518803 (+) | False | XLOC_012971 |
| TCONS_00027141 | lncRNA | downstream | 125210 | 38489672 ~ 38518601 (+) | True | XLOC_012971 |
| TCONS_00027142 | lncRNA | downstream | 384151 | 38748613 ~ 38754692 (+) | False | XLOC_012972 |
| TCONS_00027143 | lncRNA | downstream | 800901 | 39165363 ~ 39173192 (+) | True | XLOC_012980 |
| TCONS_00025823 | mRNA | upstream | 24374 | 38288877 ~ 38296665 (+) | True | XLOC_012969 |
| TCONS_00025820 | mRNA | upstream | 110947 | 38191346 ~ 38210092 (+) | False | XLOC_012968 |
| TCONS_00025821 | mRNA | upstream | 110952 | 38192499 ~ 38210087 (+) | False | XLOC_012968 |
| TCONS_00025816 | mRNA | upstream | 1039873 | 37272568 ~ 37281166 (+) | True | XLOC_012963 |
| TCONS_00025814 | mRNA | upstream | 1056801 | 37259801 ~ 37264238 (+) | False | XLOC_012962 |
| TCONS_00025827 | mRNA | downstream | 385085 | 38749547 ~ 38754502 (+) | True | XLOC_012972 |
| TCONS_00025828 | mRNA | downstream | 390561 | 38755023 ~ 38760271 (+) | False | XLOC_012973 |
| TCONS_00025829 | mRNA | downstream | 390562 | 38755024 ~ 38760251 (+) | True | XLOC_012973 |
| TCONS_00025830 | mRNA | downstream | 410122 | 38774584 ~ 38853939 (+) | False | XLOC_012974 |
| TCONS_00025831 | mRNA | downstream | 410815 | 38775277 ~ 38857612 (+) | False | XLOC_012974 |
| TCONS_00025819 | other | upstream | 303021 | 38017901 ~ 38018018 (+) | True | XLOC_012967 |
| TCONS_00025818 | other | upstream | 358142 | 37962778 ~ 37962897 (+) | True | XLOC_012966 |
| TCONS_00025817 | other | upstream | 862477 | 37458446 ~ 37458562 (+) | True | XLOC_012965 |
| TCONS_00025815 | other | upstream | 1060388 | 37259970 ~ 37260651 (+) | True | XLOC_012962 |
| TCONS_00025798 | other | upstream | 1682873 | 36633253 ~ 36638166 (+) | True | XLOC_012951 |
| TCONS_00025838 | other | downstream | 621458 | 38985920 ~ 38994767 (+) | False | XLOC_012976 |
| TCONS_00025852 | other | downstream | 1371927 | 39736389 ~ 39736503 (+) | True | XLOC_012986 |
| TCONS_00025854 | other | downstream | 1659310 | 40023772 ~ 40023888 (+) | True | XLOC_012988 |
| TCONS_00025863 | other | downstream | 2102328 | 40466790 ~ 40466904 (+) | True | XLOC_012992 |
| TCONS_00025872 | other | downstream | 2269065 | 40633527 ~ 40636178 (+) | True | XLOC_013000 |
