RNA id: TCONS_00027142


Basic Information

Item Value
RNA id TCONS_00027142
length 1374
lncRNA type sense_over
GC content 0.42
exon number 3
gene id XLOC_012972
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38748613 ~ 38754692 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATAAGTTATCAAGTGGCAGTCAAACcaaaaatatatgcatattttaaatatagCCCGCGCCGGATCCATAACTGCTCGCGCGGCTATTCAAATGCACGCGAATCTTTAAATGCACGGATAACAGAATCTAGAGGCGAGAGACAAGCAAACAACGCCGACCGAAACGGAGTTTTTGCCCGTGGATGCTGTGATTCGATCATGGAAATGGTGGAAAAGCGATTATCCCGCTGGACAGGACGCGCCGGATGGATGCAGCAAGCGCCGTGCCCGCGGAGCGCGCAGAACATATTATGCACTAAAACAAACGATTGCCGTCCATGACAAACTGTGGATAACACACTAAACTTACAGCTGTTAGCTTCAGGAGTCTTGAAGCGTCACCTTTGACATGTCCCCTATATGCGCACGAGCGGGGGGCCCAGGGCTGGGGGCCCCAGGACTGACCACTGCAAGCTGTCACCCCACCCGGGCTTGGACGCTTTCGCCGAGGCTCCTAACTGTCCGGTTATCCCGTTCTCTCGCCTGACTGGTCATGAAACTGACTTTTTGGAGTCGATTTTAACTATAAACAATGTGAAGTCGTGCAAAGTGATATCTCTGTAATATGGGCGTGGGGgtgttcaggggggctaataactgcCTAGCTCATTTTTGTTCACTTTAAAAACTTTTGCGTATAAATAATgtcaatttattaattattacattttaatctcCCACCTATTTTAGCCTATACAAGCTACAGTAATTGTATGTACATTTATCTATTGGTTACTCGCATTTTATAAAGTCGCACTGTGGCACTTTTGTTTCTCAATGGAGTTCAATTGTATTCATGGAAACCTGTATATCCAAGAAAAACGAATGCATGTTTATCGCACTGATTTGCAGGATAATCGGGTTTTGCCTATTAATTTATGTGCAAAATGAAGTTCACCCATGAAACGTAATGTGCTGTGTCATTATACTGCCAGGCCACGGAAGCGGGACACACTCCTGATGGCTTGGTTCGTTACTCTTAATAGCACAACAATAGAAACATCTGTCCAGCCTTTCTCCGCCTATTACCAATAAGTCTGTCCTTGAACTCAAAAACACTCCAACTCTGCATGAGACGAGATGAATTACATTGAATAatgtgtatttgtatgattttctgaaaataaagaaaatgtttaaataccCTGTGCAGTTCGTCCTTCCTTATTTAGATTGGatgtgatgatgataatgatgtatatttaattttgtagCTAAGCCTAGTATATCTGTAAATACATGTAAACAATTCAAAGAAATTTGAAGATTAAGGGATTTGATATGCATATTCATGCAAGTGAAGGCCCCCAGGTGAACCCGgaagtgtgttttct

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0007517 muscle organ development biological_process
GO:0030154 cell differentiation biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0048513 animal organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0005925 focal adhesion cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026925 lncRNA upstream 229810 38403325 ~ 38518803 (+) False XLOC_012971
TCONS_00027141 lncRNA upstream 230012 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00026924 lncRNA upstream 309988 38403325 ~ 38438625 (+) False XLOC_012971
TCONS_00025822 lncRNA upstream 540513 38206289 ~ 38208100 (+) True XLOC_012968
TCONS_00026923 lncRNA upstream 1385585 37358896 ~ 37363028 (+) True XLOC_012964
TCONS_00027143 lncRNA downstream 410671 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027144 lncRNA downstream 866773 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA downstream 866782 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00026926 lncRNA downstream 1764044 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027146 lncRNA downstream 1913375 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00025826 mRNA upstream 384151 38321039 ~ 38364462 (+) False XLOC_012970
TCONS_00025825 mRNA upstream 384151 38321039 ~ 38364462 (+) False XLOC_012970
TCONS_00025824 mRNA upstream 384151 38321039 ~ 38364462 (+) True XLOC_012970
TCONS_00025823 mRNA upstream 451948 38288877 ~ 38296665 (+) True XLOC_012969
TCONS_00025821 mRNA upstream 538526 38192499 ~ 38210087 (+) False XLOC_012968
TCONS_00025828 mRNA downstream 331 38755023 ~ 38760271 (+) False XLOC_012973
TCONS_00025829 mRNA downstream 332 38755024 ~ 38760251 (+) True XLOC_012973
TCONS_00025830 mRNA downstream 19892 38774584 ~ 38853939 (+) False XLOC_012974
TCONS_00025831 mRNA downstream 20585 38775277 ~ 38857612 (+) False XLOC_012974
TCONS_00025832 mRNA downstream 52547 38807239 ~ 38857612 (+) True XLOC_012974
TCONS_00025819 other upstream 730595 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025818 other upstream 785716 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025817 other upstream 1290051 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025815 other upstream 1487962 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025798 other upstream 2110447 36633253 ~ 36638166 (+) True XLOC_012951
TCONS_00025838 other downstream 231228 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025852 other downstream 981697 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025854 other downstream 1269080 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025863 other downstream 1712098 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025872 other downstream 1878835 40633527 ~ 40636178 (+) True XLOC_013000

Expression Profile

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