Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025839 |
| length | 844 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 7 |
| gene id | XLOC_012976 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 38900092 ~ 39042201 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007015 | actin filament organization | biological_process |
| GO:0030050 | vesicle transport along actin filament | biological_process |
| GO:0016459 | myosin complex | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0031982 | vesicle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000146 | microfilament motor activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003774 | motor activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0030898 | actin-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041027-2 | Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in actin cytoskeleton; cytoplasm; and vesicle. Is expressed in central nervous system; dorsolateral placode; intestine; neural tube; and neuron neural crest derived. Human ortholog(s) of this gene implicated in Griscelli syndrome type 1. Orthologous to human MYO5A (myosin VA). |
| ensembl_id | ENSDART00000148428 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027142 | lncRNA | upstream | 273725 | 38748613 ~ 38754692 (+) | False | XLOC_012972 |
| TCONS_00026925 | lncRNA | upstream | 509614 | 38403325 ~ 38518803 (+) | False | XLOC_012971 |
| TCONS_00027141 | lncRNA | upstream | 509816 | 38489672 ~ 38518601 (+) | True | XLOC_012971 |
| TCONS_00026924 | lncRNA | upstream | 589792 | 38403325 ~ 38438625 (+) | False | XLOC_012971 |
| TCONS_00025822 | lncRNA | upstream | 820317 | 38206289 ~ 38208100 (+) | True | XLOC_012968 |
| TCONS_00027143 | lncRNA | downstream | 128696 | 39165363 ~ 39173192 (+) | True | XLOC_012980 |
| TCONS_00027144 | lncRNA | downstream | 584798 | 39621465 ~ 39632025 (+) | False | XLOC_012984 |
| TCONS_00027145 | lncRNA | downstream | 584807 | 39621474 ~ 39632025 (+) | True | XLOC_012984 |
| TCONS_00026926 | lncRNA | downstream | 1482069 | 40518736 ~ 40520628 (+) | True | XLOC_012994 |
| TCONS_00027146 | lncRNA | downstream | 1631400 | 40668067 ~ 40669736 (+) | True | XLOC_013002 |
| TCONS_00025833 | mRNA | upstream | 130753 | 38885309 ~ 38897664 (+) | True | XLOC_012975 |
| TCONS_00025831 | mRNA | upstream | 170805 | 38775277 ~ 38857612 (+) | False | XLOC_012974 |
| TCONS_00025832 | mRNA | upstream | 170805 | 38807239 ~ 38857612 (+) | True | XLOC_012974 |
| TCONS_00025830 | mRNA | upstream | 174478 | 38774584 ~ 38853939 (+) | False | XLOC_012974 |
| TCONS_00025829 | mRNA | upstream | 268166 | 38755024 ~ 38760251 (+) | True | XLOC_012973 |
| TCONS_00025840 | mRNA | downstream | 24020 | 39060687 ~ 39065115 (+) | False | XLOC_012977 |
| TCONS_00025841 | mRNA | downstream | 24146 | 39060813 ~ 39064810 (+) | True | XLOC_012977 |
| TCONS_00025842 | mRNA | downstream | 30908 | 39067575 ~ 39105519 (+) | False | XLOC_012978 |
| TCONS_00025843 | mRNA | downstream | 37472 | 39074139 ~ 39083437 (+) | True | XLOC_012978 |
| TCONS_00025844 | mRNA | downstream | 70055 | 39106722 ~ 39119005 (+) | True | XLOC_012979 |
| TCONS_00025838 | other | upstream | 33650 | 38985920 ~ 38994767 (+) | False | XLOC_012976 |
| TCONS_00025819 | other | upstream | 1010399 | 38017901 ~ 38018018 (+) | True | XLOC_012967 |
| TCONS_00025818 | other | upstream | 1065520 | 37962778 ~ 37962897 (+) | True | XLOC_012966 |
| TCONS_00025817 | other | upstream | 1569855 | 37458446 ~ 37458562 (+) | True | XLOC_012965 |
| TCONS_00025815 | other | upstream | 1767766 | 37259970 ~ 37260651 (+) | True | XLOC_012962 |
| TCONS_00025852 | other | downstream | 699722 | 39736389 ~ 39736503 (+) | True | XLOC_012986 |
| TCONS_00025854 | other | downstream | 987105 | 40023772 ~ 40023888 (+) | True | XLOC_012988 |
| TCONS_00025863 | other | downstream | 1430123 | 40466790 ~ 40466904 (+) | True | XLOC_012992 |
| TCONS_00025872 | other | downstream | 1596860 | 40633527 ~ 40636178 (+) | True | XLOC_013000 |
| TCONS_00025882 | other | downstream | 2475478 | 41512145 ~ 41526488 (+) | False | XLOC_013010 |
