RNA id: TCONS_00025841


Basic Information

Item Value
RNA id TCONS_00025841
length 803
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_012977
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 39060687 ~ 39065115 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAGCATTGTGTTTATTCTACTGATTGGGGTTGTGGGTATCAAGGGTGATAAAATCATTGGAGGTCATGAATGTCAGCCTCACTCTCAGCCCTGGCAAGCGCGCCTCGATGATGGATATGGCTTGTGTGGGGGATCTTTGATACATGAGAGTTGGGTTGTGTCTGCTGCACACTGCAAGTCCTCATCTATCATCGTCCATCTGGGAAAACACGACCTGTTTGTTGTTGAAGACACAGCGCAGGAGATCCAAGCAGAGAAGGTGATTTCTCACCCAAAGTACAATAATAGGGAACACAACAATGACATCATGCTGATCAAGCTGAGAGAGCCTGCTGTTATCAACAACAATGTGAAGCCAGTCCCACTTCCAACCAATTGCTCTCATGCAGGGGAGCAGTGCTTGGTTTCTGGATGGGGCGTAACTGGAGattCCATTTCTTCTACACTGCAGTGTTTGGAATTGCCTATATTATCAAAAGCAGACTGTAAAAGTGCGTATGGAAGAGTCATAACGAAAAAGATGTTCTGTGCTGGATTCATGGATGGAGGAAAAGACTCATGTCAGTCCTTTCAGGGGGATTCTGGTGGTCCTGTAGTGTGCAATGGGACACTGAAAGGCATTGTGTCCTTTGGCATTGGTTGCGCTGAACCAGGCTTTCCTGGGGTTTATGTTGAAGTGTGCCGCTACATAAACTGGATCAACTACATCATAGCTAATAACTAACTGCTTGTTCAGCCTGTTTGGTTCTGTTTTGATTAATTTTCTTAATAATCAGTAACTGGATAAAGCTttcaaca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-48 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDART00000136367

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027142 lncRNA upstream 306121 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00026925 lncRNA upstream 542010 38403325 ~ 38518803 (+) False XLOC_012971
TCONS_00027141 lncRNA upstream 542212 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00026924 lncRNA upstream 622188 38403325 ~ 38438625 (+) False XLOC_012971
TCONS_00025822 lncRNA upstream 852713 38206289 ~ 38208100 (+) True XLOC_012968
TCONS_00027143 lncRNA downstream 100553 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027144 lncRNA downstream 556655 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA downstream 556664 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00026926 lncRNA downstream 1453926 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027146 lncRNA downstream 1603257 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00025834 mRNA upstream 18612 38900092 ~ 39042201 (+) False XLOC_012976
TCONS_00025836 mRNA upstream 18632 38900134 ~ 39042181 (+) False XLOC_012976
TCONS_00025835 mRNA upstream 18632 38900134 ~ 39042181 (+) False XLOC_012976
TCONS_00025837 mRNA upstream 18632 38908903 ~ 39042181 (+) False XLOC_012976
TCONS_00025839 mRNA upstream 24146 39028417 ~ 39036667 (+) True XLOC_012976
TCONS_00025842 mRNA downstream 2765 39067575 ~ 39105519 (+) False XLOC_012978
TCONS_00025843 mRNA downstream 9329 39074139 ~ 39083437 (+) True XLOC_012978
TCONS_00025844 mRNA downstream 41912 39106722 ~ 39119005 (+) True XLOC_012979
TCONS_00025845 mRNA downstream 262200 39327010 ~ 39382869 (+) True XLOC_012981
TCONS_00025846 mRNA downstream 351547 39416357 ~ 39430399 (+) False XLOC_012982
TCONS_00025838 other upstream 66046 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025819 other upstream 1042795 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025818 other upstream 1097916 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025817 other upstream 1602251 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025815 other upstream 1800162 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025852 other downstream 671579 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025854 other downstream 958962 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025863 other downstream 1401980 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025872 other downstream 1568717 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025882 other downstream 2447335 41512145 ~ 41526488 (+) False XLOC_013010

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110503661 True 581 mRNA 0.54 4 NC_048567.1 13359882 ~ 13360962 (-)