RNA id: TCONS_00025842


Basic Information

Item Value
RNA id TCONS_00025842
length 2001
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_012978
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 39067575 ~ 39105519 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACACCTGACACAAACTTCTTTTCAACGGTCCAGCTTCAACCAGACGCAAAGATGTGCGACCAGACATTCTTGGCCATCACATTTGGCCCATGTGATAAATGCAGTGAGAACAAACCTCTGATGAATATTTATCTGAAGAATGAGCCAATCAACTACTGCTCGCTATGTGTGGAGATGATGGCCTGTCAGGGACTGGCGAAGGGCGAAACTGTCCAAAGCCTGAAAGCGGAGTCGGAGTCTTTAAAAGCCAAACTGGAGGAGGAGAGAGCCAAACTACACGACGTCGAGCTGCATCAGGTGGCAGAAAAGATGGAAGCTCTGGGTCAGTTTGTCATGAAGACCCGTCGAACGTTAAAAGGGCATGGAAATAAAGTTCTGTGTATGGACTGGTGCCGGGACAAGAGAAGAATCGTCAGCTCCTCTCAGGATGGAAAAGTCATTGTGTGGGATGCATACACAACCAATAAGGAGCATGCGGTCACTATGCCCTGTACCTGGGTCATGGCTTGCGCTTATGCCCCCTCTGGCTGTGCTGTGGCTTGTGGCGGTTTGGATAATAAATGCTCCGTCTATCCTCTTTCTTTGGATAAAAATGAAAACCTGGCATCTAAGAAGAAATCAGTGGCCATGCACACCAACTATTTGTCTTCCTGCAGCTTCACCAAATCTGACATGCAGATTCTGACATCTAGTGGTGATGGGAcatgtgcattatgggatgtcgaGAGTGGGCAGTTGCTGCAGAGTTTCCATGGTCACTCGGCTGATGTTCTCTCTCTTGACCTCGCACCCTCTGAGACGGGAAGCACCTTTGTGTCAGGGggCTGTGATAAGAAGGCTAATGTGTGGGACATGCGTTCGGGACAGAACGTTCAGTCTTTTGAGACCCATGATTCTGACATCAACAGTGTAAAGTATTACCCCAGTGGAGATGCTTTTGCCTCTGGATCTGATGATGCCACGTGTCGTCTGTATGATCTGCGAGCTGACCGTGAAGTGGCCATCTACTCCAAAGATAGCATTATATTCGGTGCTTCCAGTGTGGACTTTTCCCTCAGTGGCCGATTGCTGTTCGCTGGATATAATGATTACAACATTAACGTCTGGGATGTCCTGAAAGGTACCAGAGTGGCAATTCTCTTTGGTCATGAAAATCGGGTCAGCACTGTCAGAGTGTCTCCTGACGGCACCGCGTTCTGCTCGGGTTCATGGGATAACACTTTACGGATCTGGGCTTGAGGAGTCATGCTGGAGGAGATACTTTCACTTCTCAGTATCAAAGCACACAGGGCGACTGTAGGGAATCTTATCTAGAGatacagactttttttttaatatcttagCACAATTAAATGTCCCTTTCTTGGCTTCTCACCAAAATATAAACACTGCTACTAATTATAATATAAAGAAAACTATTTAGAACAAGacagttttttaattaaacacctttttagatatttttatcaGAGTTTAAAGACATGTATTTAGAAAAGTAaatgttagtattattatatcATAACTACATCATCATGAAGTTTTGCTTGCACTAGAATGATGAAAATATAGaaaagtattttgtttgtttttcatgtcAGTGATGATATAGTTTACCAAAATCAACAATTGATCACAATAATCTGATCGCTTAGTTTGTCCACATCAGTATTGTTAACATTTTCCTGATGAAATACACTTGTTTACCATTGCTTGTTGTCTATATAATGTAGTCGTTGAGTGTTACCATTGTATTCAATAAAACGAATGCACTTTCATGTATTTTGTGCTTTTTAAGGTACCACTGTGATTGTGAGTGTGAAAGGTGAGTGTTAatgggtaaaaataaatacataagtttACATTAATGAGAAAGGAAATCCACTGAATCGATGAGGACTGGCTGGGATATTTAGGAATCCATTTTGATTTATAAATAGAGGAGTAGATAATATTTATGTACACAAATTTGACTGTAATACTAACAGCTGAAACAGAAAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0031682 G-protein gamma-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1712 Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and dopamine receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in cardiovascular system; cranial ganglion; neurons; and visual system. Orthologous to human GNB5 (G protein subunit beta 5).

Ensembl:

ensembl_id ENSDART00000077724

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027142 lncRNA upstream 312883 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00026925 lncRNA upstream 548772 38403325 ~ 38518803 (+) False XLOC_012971
TCONS_00027141 lncRNA upstream 548974 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00026924 lncRNA upstream 628950 38403325 ~ 38438625 (+) False XLOC_012971
TCONS_00025822 lncRNA upstream 859475 38206289 ~ 38208100 (+) True XLOC_012968
TCONS_00027143 lncRNA downstream 59844 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027144 lncRNA downstream 515946 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA downstream 515955 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00026926 lncRNA downstream 1413217 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027146 lncRNA downstream 1562548 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00025840 mRNA upstream 2460 39060687 ~ 39065115 (+) False XLOC_012977
TCONS_00025841 mRNA upstream 2765 39060813 ~ 39064810 (+) True XLOC_012977
TCONS_00025834 mRNA upstream 25374 38900092 ~ 39042201 (+) False XLOC_012976
TCONS_00025836 mRNA upstream 25394 38900134 ~ 39042181 (+) False XLOC_012976
TCONS_00025835 mRNA upstream 25394 38900134 ~ 39042181 (+) False XLOC_012976
TCONS_00025844 mRNA downstream 1203 39106722 ~ 39119005 (+) True XLOC_012979
TCONS_00025845 mRNA downstream 221491 39327010 ~ 39382869 (+) True XLOC_012981
TCONS_00025846 mRNA downstream 310838 39416357 ~ 39430399 (+) False XLOC_012982
TCONS_00025848 mRNA downstream 310985 39416504 ~ 39430956 (+) False XLOC_012982
TCONS_00025847 mRNA downstream 310985 39416504 ~ 39430956 (+) True XLOC_012982
TCONS_00025838 other upstream 72808 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025819 other upstream 1049557 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025818 other upstream 1104678 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025817 other upstream 1609013 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025815 other upstream 1806924 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025852 other downstream 630870 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025854 other downstream 918253 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025863 other downstream 1361271 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025872 other downstream 1528008 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025882 other downstream 2406626 41512145 ~ 41526488 (+) False XLOC_013010

Expression Profile

//