RNA id: TCONS_00025843


Basic Information

Item Value
RNA id TCONS_00025843
length 634
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_012978
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 39067575 ~ 39105519 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCATCATCAGCTGTGCAGACTGTGCAGTATCAGTCTCGGCTTATgataaaaaatcatatttactGACCAATTCGCCATCCGTTTGTGCTTTATTAAAGATGGCCTGTCAGGGACTGGCGAAGGGCGAAACTGTCCAAAGCCTGAAAGCGGAGTCGGAGTCTTTAAAAGCCAAACTGGAGGAGGAGAGAGCCAAACTACACGACGTCGAGCTGCATCAGGTGGCAGAAAAGATGGAAGCTCTGGGTCAGTTTGTCATGAAGACCCGTCGAACGTTAAAAGGGCATGGAAATAAAGTTCTGTGTATGGACTGGTGCCGGGACAAGAGAAGAATCGTCAGCTCCTCTCAGGATGGAAAAGTCATTGTGTGGGATGCATACACAACCAATAAGGAGCATGCGGTCACTATGCCCTGTACCTGGGTCATGGCTTGCGCTTATGCCCCCTCTGGCTGTGCTGTGGCTTGTGGCGGTTTGGATAATAAATGCTCCGTCTATCCTCTTTCTTTGGATAAAAATGAAAACCTGGCATCTAAGAAGAAATCAGTGGCCATGCACACCAACTATTTGTCTTCCTGCAGCTTCACCAAATCTGACATGCAGATTCTGACATCTAGTGGTGATGGGAcatgtgca

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0031682 G-protein gamma-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1712 Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and dopamine receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in cardiovascular system; cranial ganglion; neurons; and visual system. Orthologous to human GNB5 (G protein subunit beta 5).

Ensembl:

ensembl_id ENSDART00000142390

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027142 lncRNA upstream 319447 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00026925 lncRNA upstream 555336 38403325 ~ 38518803 (+) False XLOC_012971
TCONS_00027141 lncRNA upstream 555538 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00026924 lncRNA upstream 635514 38403325 ~ 38438625 (+) False XLOC_012971
TCONS_00025822 lncRNA upstream 866039 38206289 ~ 38208100 (+) True XLOC_012968
TCONS_00027143 lncRNA downstream 81926 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027144 lncRNA downstream 538028 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA downstream 538037 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00026926 lncRNA downstream 1435299 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027146 lncRNA downstream 1584630 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00025840 mRNA upstream 9024 39060687 ~ 39065115 (+) False XLOC_012977
TCONS_00025841 mRNA upstream 9329 39060813 ~ 39064810 (+) True XLOC_012977
TCONS_00025836 mRNA upstream 31958 38900134 ~ 39042181 (+) False XLOC_012976
TCONS_00025844 mRNA downstream 23285 39106722 ~ 39119005 (+) True XLOC_012979
TCONS_00025845 mRNA downstream 243573 39327010 ~ 39382869 (+) True XLOC_012981
TCONS_00025846 mRNA downstream 332920 39416357 ~ 39430399 (+) False XLOC_012982
TCONS_00025848 mRNA downstream 333067 39416504 ~ 39430956 (+) False XLOC_012982
TCONS_00025847 mRNA downstream 333067 39416504 ~ 39430956 (+) True XLOC_012982
TCONS_00025838 other upstream 79372 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025819 other upstream 1056121 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025818 other upstream 1111242 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025817 other upstream 1615577 37458446 ~ 37458562 (+) True XLOC_012965
TCONS_00025815 other upstream 1813488 37259970 ~ 37260651 (+) True XLOC_012962
TCONS_00025852 other downstream 652952 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025854 other downstream 940335 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025863 other downstream 1383353 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025872 other downstream 1550090 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025882 other downstream 2428708 41512145 ~ 41526488 (+) False XLOC_013010

Expression Profile

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