RNA id: TCONS_00025862


Basic Information

Item Value
RNA id TCONS_00025862
length 1872
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_012991
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40462445 ~ 40469527 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCAGTAACAGCCAATATCAGCAAGACAGAAGCATATGCCGGTCAATATATAACAGTAAGATGACACGAGTTCCAAATAATATGGTTTCTGTCTCACTCtggacaacagtaataacaatTTTTGGTTCTCTTTGCGATGGTGGCAAAATCTTGGTTGCGCCTTTGGAGGGAAGTCACTGGGTGAACATGGACATCCTCATCAAGGCTTTACATGGTCAAGGGCACACCGTTGATGTGATACGCAATGCCAATAGTTGGTTCATTAAGGAGAACTCAACATATTATGACACCATTACCATACCTAACACTAAAGGATGGGACGAGGAATTTGCAGCAGACTTCGTCTACAAAATGATCAAATACGAAAAAGAAAAAGGCTCCTGGCTGAGTATTGTAAggctgtatttaaatgtgtttgatgcTGTCAAAAAAACTCATGAAATGGTGTGTCAGCTTATAACAAACATACTCGACAGTGAGGAAATTCTGAAGATGCTGAATGAAAAGCAGTATGATCTGATGCTCACTGATCCAGTATGGGGTACAGGCATTATTCTGGCTCATAAACTCAAGTTACCCATGGTATATAATGTTAGATGGACTACTACTGGAGAAGGACACTTTGACATCGCTCCTTCACCAATGTCCTACATCCCCATTACAGGATCTGGAAACACAGACAGAATGAGCTTCTTTCAACGACTAAAAAATTATTTCTTCTATTTGTTATTGGACCTTCAGTTAAGCCATTTTAATGTGAAACAGTACCAGGCAATTTGTGACAAATATTTCACTTCACGTGTCAATTTTCATGAACTTCTGCAGGGGGCTGATTTATGGCTCATGAGggttgattttgtttttgaatttccACGTCCGACAATGCCAAATATCATCTACATTGGTGGCTTTCAGTGCCCTCCAGCAAAGCCCCTTCCACATGATCTGGAAGACTTCATGCAGAGTTCTGGAGATCATGGAGTCATCGTTATGTCTTTAGGGTCGTTAATCGGTAACCTGCCAGAAAATGTAACAGCAGAAATAGCTGCTGCTTTTGCCCGGTTGCCTCAAAAGGTTATTTGGAGATACACTGGAAAGAAGCCATCTACTTTGAGTAACAACACATTAATGGTTGACTGGATGCCACAGAAAGATCTTCTAGGACATCCAAAAACTAAAGTTTTCATTTCACATGGTGGAACCAATGGGGTTCTAGAAGCTTTGTACCATGGTGTTCCAGTGATTGGAATCCCATTCTTTTTTGACCAGTATGACAATCTCATTCGATTACAAGCAAGAGGTGGAGCCAAGTTGCTTTCCATTGCAGATCTAGGTGAAAACACACTGCATGCAGCAATACAGGAAGTAATCAATGAGCCATCCTACAGGCTGAATATGCACAAGCTCTCTCATCTGCACAAAGATAAGCCAGTCAAACCTTTGGACAGCGCCATCTTCTGGATTGAGTTTGTAATGAGGCACAAAGGTGCTGCTCATCTTCGTACAGAATCCTACAAAATGCCTTGGTACTCCTATCACTCAGTAGATGTTGTAGTTACTCTGTTTGCAGTTGTTTTGATATTAACTTACTGCATATTTGTAACAGTTAGATATCTGTGTGTCAAGTGTTGTagccaaaaaagaaaaactgagtAACCTTTTACAAGTGATATAATAATTTGACAATGTTCAGTGTTTGACAAAAAATAATGtatactttgaaaatgttttgtgtCAAATGTTGtagctgaaaaagaaaaactgattGAACCATTTGAACTATAAAGTGCATCATTTATAAGTGACATATATGATTTGTTTTTACTGTTCAATGGGTGataaaaatgatataataaaaaatatacatac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008194 UDP-glycosyltransferase activity molecular_function
GO:0015020 glucuronosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-206 Predicted to enable UDP-glycosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in eye; female organism; liver; male organism; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000087645

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027144 lncRNA upstream 830420 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA upstream 830420 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00027143 lncRNA upstream 1289253 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027142 lncRNA upstream 1707753 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00027141 lncRNA upstream 1943844 38489672 ~ 38518601 (+) True XLOC_012971
TCONS_00026926 lncRNA downstream 49209 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027146 lncRNA downstream 198540 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00027147 lncRNA downstream 291114 40760641 ~ 40763051 (+) True XLOC_013003
TCONS_00027148 lncRNA downstream 432371 40901898 ~ 40902607 (+) True XLOC_013004
TCONS_00027149 lncRNA downstream 719212 41188739 ~ 41193714 (+) False XLOC_013006
TCONS_00025861 mRNA upstream 720 40460130 ~ 40461725 (+) True XLOC_012990
TCONS_00025860 mRNA upstream 74583 40381102 ~ 40387862 (+) True XLOC_012989
TCONS_00025855 mRNA upstream 78132 40354998 ~ 40384313 (+) False XLOC_012989
TCONS_00025865 mRNA downstream 2299 40471826 ~ 40477865 (+) True XLOC_012993
TCONS_00025866 mRNA downstream 55881 40525408 ~ 40540703 (+) True XLOC_012995
TCONS_00025867 mRNA downstream 83093 40552620 ~ 40565776 (+) True XLOC_012996
TCONS_00025868 mRNA downstream 102767 40572294 ~ 40583104 (+) True XLOC_012997
TCONS_00025869 mRNA downstream 114761 40584288 ~ 40604363 (+) True XLOC_012998
TCONS_00025854 other upstream 438557 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025852 other upstream 725942 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025838 other upstream 1467678 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025819 other upstream 2444427 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025818 other upstream 2499548 37962778 ~ 37962897 (+) True XLOC_012966
TCONS_00025872 other downstream 164000 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025882 other downstream 1042618 41512145 ~ 41526488 (+) False XLOC_013010
TCONS_00025883 other downstream 1042632 41512159 ~ 41520460 (+) False XLOC_013010
TCONS_00025892 other downstream 1113264 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025893 other downstream 1187960 41657487 ~ 41659824 (+) True XLOC_013015

Expression Profile

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