Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025868 |
| length | 1756 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 14 |
| gene id | XLOC_012997 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 40572294 ~ 40583104 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006810 | transport | biological_process |
| GO:0035725 | sodium ion transmembrane transport | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0042165 | neurotransmitter binding | molecular_function |
| GO:0015293 | symporter activity | molecular_function |
| GO:0005328 | neurotransmitter | molecular_function |
| GO:0005332 | gamma-aminobutyric acid | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050420-178 | Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13). |
| ensembl_id | ENSDART00000147003 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026926 | lncRNA | upstream | 51666 | 40518736 ~ 40520628 (+) | True | XLOC_012994 |
| TCONS_00027144 | lncRNA | upstream | 940269 | 39621465 ~ 39632025 (+) | False | XLOC_012984 |
| TCONS_00027145 | lncRNA | upstream | 940269 | 39621474 ~ 39632025 (+) | True | XLOC_012984 |
| TCONS_00027143 | lncRNA | upstream | 1399102 | 39165363 ~ 39173192 (+) | True | XLOC_012980 |
| TCONS_00027142 | lncRNA | upstream | 1817602 | 38748613 ~ 38754692 (+) | False | XLOC_012972 |
| TCONS_00027146 | lncRNA | downstream | 84963 | 40668067 ~ 40669736 (+) | True | XLOC_013002 |
| TCONS_00027147 | lncRNA | downstream | 177537 | 40760641 ~ 40763051 (+) | True | XLOC_013003 |
| TCONS_00027148 | lncRNA | downstream | 318794 | 40901898 ~ 40902607 (+) | True | XLOC_013004 |
| TCONS_00027149 | lncRNA | downstream | 605635 | 41188739 ~ 41193714 (+) | False | XLOC_013006 |
| TCONS_00026927 | lncRNA | downstream | 605686 | 41188790 ~ 41227202 (+) | False | XLOC_013006 |
| TCONS_00025867 | mRNA | upstream | 6518 | 40552620 ~ 40565776 (+) | True | XLOC_012996 |
| TCONS_00025866 | mRNA | upstream | 31591 | 40525408 ~ 40540703 (+) | True | XLOC_012995 |
| TCONS_00025865 | mRNA | upstream | 94429 | 40471826 ~ 40477865 (+) | True | XLOC_012993 |
| TCONS_00025862 | mRNA | upstream | 102767 | 40462445 ~ 40469527 (+) | False | XLOC_012991 |
| TCONS_00025864 | mRNA | upstream | 102980 | 40467719 ~ 40469314 (+) | True | XLOC_012991 |
| TCONS_00025869 | mRNA | downstream | 1184 | 40584288 ~ 40604363 (+) | True | XLOC_012998 |
| TCONS_00025870 | mRNA | downstream | 26049 | 40609153 ~ 40613189 (+) | True | XLOC_012999 |
| TCONS_00025871 | mRNA | downstream | 34613 | 40617717 ~ 40638096 (+) | False | XLOC_013000 |
| TCONS_00025873 | mRNA | downstream | 60556 | 40643660 ~ 40660847 (+) | True | XLOC_013001 |
| TCONS_00025874 | mRNA | downstream | 410092 | 40993196 ~ 41051768 (+) | False | XLOC_013005 |
| TCONS_00025863 | other | upstream | 105390 | 40466790 ~ 40466904 (+) | True | XLOC_012992 |
| TCONS_00025854 | other | upstream | 548406 | 40023772 ~ 40023888 (+) | True | XLOC_012988 |
| TCONS_00025852 | other | upstream | 835791 | 39736389 ~ 39736503 (+) | True | XLOC_012986 |
| TCONS_00025838 | other | upstream | 1577527 | 38985920 ~ 38994767 (+) | False | XLOC_012976 |
| TCONS_00025819 | other | upstream | 2554276 | 38017901 ~ 38018018 (+) | True | XLOC_012967 |
| TCONS_00025872 | other | downstream | 50423 | 40633527 ~ 40636178 (+) | True | XLOC_013000 |
| TCONS_00025882 | other | downstream | 929041 | 41512145 ~ 41526488 (+) | False | XLOC_013010 |
| TCONS_00025883 | other | downstream | 929055 | 41512159 ~ 41520460 (+) | False | XLOC_013010 |
| TCONS_00025892 | other | downstream | 999687 | 41582791 ~ 41585575 (+) | True | XLOC_013014 |
| TCONS_00025893 | other | downstream | 1074383 | 41657487 ~ 41659824 (+) | True | XLOC_013015 |
