RNA id: TCONS_00025871


Basic Information

Item Value
RNA id TCONS_00025871
length 2711
RNA type mRNA
GC content 0.44
exon number 14
gene id XLOC_013000
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40617717 ~ 40638096 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCACCATTGTACAGTTGCCACAGACAGAAGCATCATTGGAAACTGGAAGTGTTGGAGAGAAGAAATGAGCACAATCAAAGAAAAAATCGAAGAGCGAGGGTTCTGGGGCAAAAAAACAGAGTTTCTTCTGGCTGTGGCAGGAAATGTGGTTGGACTGGGTAACGTGTGGAGGTTTCCTTACCTCTGCTACAGAAATGGAGGAGGGGTGTTCCTGATACCTTACCTGGTGTTTGTTGTGACCTGTGGGGTGCCTCTGTTCCTGTTGGAGACGGCTATGGGGCAGTTCACACATGAAGGGGGCATTACATGCTGGCATCGCCTCTGTCCACTGGCTCAGGGTATTGGCTATGCAGGACAGCTCACAGTGCTGTACAGCTGCATGTATTTTACCATCATTCTGGCCTGGGCACTTTTCTATCTCATCTCCTCTTTCAGCTCACAACTGCCGTGGGCCAGCTGTGACAACATCTGGAACACAGACAACTGTGTAAATCTTGCTGCAGGAAATCTTACTTTCAACCGGACAACACAGATGTTGATTAATTCAACATCTGCAGCTACCGAGTTCTGGGAACGCAGAGTTCTGTCTCTCTCTGGAGGTATTGAGGACATCGGCAAGATCAACTGGGAGATTCTTCTGTGTCTCATTGCAATGTGGATCATATGTTATTTCTGCATCTGGAAAGGAGTCAAGTCGACAGGCAAGGTGGTGTATTTCACAGCTACATTTCCTTATGTGATGCTGATTGTGTTGCTGATTCGTGGGTTGACTCTACCTGGAGCTCTGCAGGGGATTGTGTTTTACTTGTATCCTGAACCAGCCCGCCTTGCTGACCCACAGgtttgGATGGAAGCAGGAACTCAGATCTTCTTCTCCTATAGTGTGATTGGTGGTGTTCTAATTTCACTTGGGAGCTATAATCAATACAACAACAACTGCTATAGGGACTGCTTTTGGCTTTGCCTTCTGAACAGTGGCACCAGTTTTGTGGCTGGTTTTGCTGTGTTCTCAGTCTTGGGCTTTATGGCTCATGTGCAAGGCGTCCCAATTGAAGAAGTAGCAGAATCTGGCCCAGGACTAGCATTCATTGCTTATCCACAGGCAGTAGCTATGATGCCTTTTCCTCAGTTGTGGGCTGTTTGTTTTTTCatcatgattattttgcttgGCCTAGACACACAGTTTGTTTCAGTAGAGTGTGTGATTACATCAGTGATGGACTTGTTCCCTGAGGTGCTGCGCAGAGCTGGACGTCGAGAACTTTTAGTCCTGCTCCTCTGTCTCACGTGTTTCTTTGGACAACTCATCATGGTTACAGAGGGTGGGATGTATGTATTCCAGCTGTTTGATAACTACGCCTGTAATGGAGCCTGTCTTCTGTTCCTGTCTGTGTTTGAGTCTCTGGCCATCGGTTGGATCTTCGGGGCTGAGAAAATGTTTGACATAATCGAGGACATGACAGAGTCACGACCCAACTATTGGTTCATGCTGTGCTGGAAATACTTGACTCCTCTTGTGTCTCTGACGTCTTTTGTTTATTCTATGGTGAGGTACACACCTCTGACTTTTAACCGCTGGTACATATACCCGGACTGGGCATATGTACTCGGCTGGTTATTGGCTCTGTCCTCTATTCTGCTGGTGCCTGCATGGGCGCTGGGCCAAATGTGTGCTGGTAAAGGAAGCCTGAAACAGCGTTGGCGTCACTTGAGTAGTCCTGAGACAAATTTTCCTCTCTCTTTTAAACAAGTACAGAAGCAAACTGCAGAGATGGAAGACTTACTCAAGAGCGGCACAATATAAATCATTACATGGGGGCACAAAAGGTTTTTGAAATATAACTAATATGCAGTTTAAGTCAGAGTTATTACCCcctcttagaatttttttttctttttttaaatatttctgattATTCACAGAGcattgaaattttcacagtatgtgttgGGGGGGGGCTGTGTCTAGTTATTTGTGTGCAATTTCACCAGTTAGCAATTCTCGTTTCCCCGTCCCCATTACTCTCACCTGTTTTCCATGATTATTTGGCTATTTAGTCTCCCCTTCTCCCTTGTTCTGTGCTTGATAATAATTTTCTTTTGTCTGTGAGTTATCTGAGTTACCAGTCCTTCCCTATCAGAAGATAAAACCTTTCGTATTTTGTCTCATCCAATCCTGTTCTGTCTCTACCCACTGGTTGTTCGATCATCTGTGCATTGGCTCACCTCTGCTTTGGCCACAGTCTGCGCTCAAATGAAGTCTATCCACCAGTTCGGCTCCCTGAGTTCTGTTCCTTTATTTTCGACTGTTTAACCAAGAGGGTCTTTTTGTTTGACCAGTCCATCATCGCCCAGAGGAGGGCTGATCGCTGACTGCCTCTGTTCTCTATTATATTTTTGAGTGACTCCCCTATTGCCCTAATAAGAGCAGAGTTTTGATAcacttctgtttaataaatctgctttaACTTCTCCCTTGCACTTGGGTCTCTTTTATATCacaacagtatgtctgataatatattttcttctggagaaagtcttacttgttttattttggctaaaataaaagccgtttagaatttttttttaaaactatttttaggtcaaaattataacccctttaagctatatattttttccgattgtctaaccaatcattatacaataacttgcctatttatcctaagatgcctagttaacctaatt

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-110 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000049423

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026926 lncRNA upstream 97089 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027144 lncRNA upstream 985692 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA upstream 985692 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00027143 lncRNA upstream 1444525 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027142 lncRNA upstream 1863025 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00027146 lncRNA downstream 29971 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00027147 lncRNA downstream 122545 40760641 ~ 40763051 (+) True XLOC_013003
TCONS_00027148 lncRNA downstream 263802 40901898 ~ 40902607 (+) True XLOC_013004
TCONS_00027149 lncRNA downstream 550643 41188739 ~ 41193714 (+) False XLOC_013006
TCONS_00026927 lncRNA downstream 550694 41188790 ~ 41227202 (+) False XLOC_013006
TCONS_00025870 mRNA upstream 4528 40609153 ~ 40613189 (+) True XLOC_012999
TCONS_00025869 mRNA upstream 13354 40584288 ~ 40604363 (+) True XLOC_012998
TCONS_00025868 mRNA upstream 34613 40572294 ~ 40583104 (+) True XLOC_012997
TCONS_00025867 mRNA upstream 51941 40552620 ~ 40565776 (+) True XLOC_012996
TCONS_00025866 mRNA upstream 77014 40525408 ~ 40540703 (+) True XLOC_012995
TCONS_00025873 mRNA downstream 5564 40643660 ~ 40660847 (+) True XLOC_013001
TCONS_00025874 mRNA downstream 355100 40993196 ~ 41051768 (+) False XLOC_013005
TCONS_00025875 mRNA downstream 355273 40993369 ~ 41047681 (+) True XLOC_013005
TCONS_00025876 mRNA downstream 594623 41232719 ~ 41251084 (+) False XLOC_013007
TCONS_00025877 mRNA downstream 594623 41232719 ~ 41309805 (+) False XLOC_013007
TCONS_00025863 other upstream 150813 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025854 other upstream 593829 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025852 other upstream 881214 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025838 other upstream 1622950 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025819 other upstream 2599699 38017901 ~ 38018018 (+) True XLOC_012967
TCONS_00025882 other downstream 874049 41512145 ~ 41526488 (+) False XLOC_013010
TCONS_00025883 other downstream 874063 41512159 ~ 41520460 (+) False XLOC_013010
TCONS_00025892 other downstream 944695 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025893 other downstream 1019391 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025894 other downstream 1030088 41668184 ~ 41668309 (+) True XLOC_013016

Expression Profile

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