RNA id: TCONS_00025873


Basic Information

Item Value
RNA id TCONS_00025873
length 1975
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_013001
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40643660 ~ 40660847 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTCCACTAATATAGTTACCGCTGACAGAAGCATCATTGGAAACTGGAAGTGTTGGAGAGAAGAAATGAACCCAATCAAAGAAGAAATAGAGGAGCGAGGGTTCTGGGGCAAAAAAGCTGAGTTTCTTCTGGCTGTGGCAGGAAATGTAGTTGGACTGGGTAACGTGTGGAGGTTTCCTTACCTCTGCTACAGAAATGGAGGAGGCGTGTTTCTGATACCATACCTGGTGTTTGTGGTGACCTGTGGGCTGCCTCTGTTCCTGCTGGAGACGGCTATGGGGCAGTTCACACATGAAGGAGGCATTACATGTTGGCATCGCCTCTGTCCACTGGCTCAGGGTGTTGGCTATGCAGGACAGCTCACAGTACTTTACAGCTGCATGTATTACACCATCATTCTGGCCTGGGCACTTTTCTATCTCGTCTCTTCTTTCAGCTCACAACTGCCGTGGGTCAGTTGTAACAACATCTGGAACACAGaCAACTGTGTAAATCTTGCTGCAGGAAATCTTACTTTCAACCGAACAACACTGGCTAATTCAACATCTGCAGCTACCGAGTTCTGGGAACGCAGAGTTCTATCTCTCTCTGGAGGTATTGAGGATATCGGCAAGATCAACTGGGAGATTCTTCTGTGTCTCATTGCAATGTGGATCATATGTTATTTCTGCATCTGGAAAGGGGTCAAATCTACAGGCAAGGTGGTGTATTTCACAGCTACATTTCCTTACGTGATGCTGCTTGTGTTGCTGATTCGTGGGTTGACTCTTCCTGGAGCTCTGCAGGGGGTTGTGTTTTACTTGTACCCTGAACCAGCCCGCCTTGCTGACCCACAGgtttGGATGGAGGCAGGAACTCAGGTCTTCTTTTCCTACAGTGTGTGTAGTGGCATTCTCATTTCACTTGGCAGCTATAATCAATACAGCAACAACTGCTACAGGGACTCCTTTTGGCTTTGCCTTCTGAACAGTGGCACCAGTTTTGTGGCTGGGTTTGCTGTGTTCTCAGTCTTGGGCTTCATGGCTCATGTGCAGGGCGTCCCTGTTGAAGAAGTAGCAGAATCAGGTCCAGGATTAGCTTTCATTGCTTATCCACAGGCAATGGCTATGATGCCCTTCCCTCAGTTGTGGGCTGTTTGCTTCTTCATCATGATTATTTTGCTAGGCCTAGATTCACAGTTTGTCGGAATAGAGTGTGTGATTACTTCAGTGATGGACTTGTTCCCTGAGGTGCTGCGCAGAGCTGGTCGTCGAGAACTTTTTGTCCTGCTCCTCTGTCTCACTTGTTTCTTTGGACAACTCATCATGGTTACAGAGGGGGGGATGTATGTATTCCAGCTGTTTGATAACTACGCCTGTAATGGAGCCTGTCTTCTGTTCCTGTCTGTGTTTGAGTCTCTGGCCATCGGTTGGCTCTTCGGGGCTGAGAAAATGTTTGACATAATCGAGGACATGACAGAGTCACGACCCAACTACTGGTTCATGCTGTGCTGGAAATACTTGACTCCTCTTGTGTCTCTGATGTCTTTTGTTTATTCTATGGTGAGGTACACACCTCTGACTTTTAACCGCTGGTATGTGTACCCGGACTGGGCATATGCACTAGGCTGGTTATTGGCTCTGTCCTCCATTCTGCTGGTGCCTGGATGGGCGCTGGGCCAAATGTGGGCTGGTAAAGGAACCCTGAAACAGCGTTGGGGCCACTTGTGTAGCCCTGAGACAAAGCTCATGCTCTCCTTTAAACAAATACAGGACCAATTTGCAGAGATGGAAGACTTGGTCAAGAGCAGCACAATATAAAGCATTCTACGGGGGTACAATCGGTCTCTGAAACATAGCGAATGTCatgttagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacacacacacactcaca

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-179 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDART00000134235

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026926 lncRNA upstream 123032 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027144 lncRNA upstream 1011635 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027145 lncRNA upstream 1011635 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00027143 lncRNA upstream 1470468 39165363 ~ 39173192 (+) True XLOC_012980
TCONS_00027142 lncRNA upstream 1888968 38748613 ~ 38754692 (+) False XLOC_012972
TCONS_00027146 lncRNA downstream 7220 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00027147 lncRNA downstream 99794 40760641 ~ 40763051 (+) True XLOC_013003
TCONS_00027148 lncRNA downstream 241051 40901898 ~ 40902607 (+) True XLOC_013004
TCONS_00027149 lncRNA downstream 527892 41188739 ~ 41193714 (+) False XLOC_013006
TCONS_00026927 lncRNA downstream 527943 41188790 ~ 41227202 (+) False XLOC_013006
TCONS_00025871 mRNA upstream 5564 40617717 ~ 40638096 (+) False XLOC_013000
TCONS_00025870 mRNA upstream 30471 40609153 ~ 40613189 (+) True XLOC_012999
TCONS_00025869 mRNA upstream 39297 40584288 ~ 40604363 (+) True XLOC_012998
TCONS_00025868 mRNA upstream 60556 40572294 ~ 40583104 (+) True XLOC_012997
TCONS_00025867 mRNA upstream 77884 40552620 ~ 40565776 (+) True XLOC_012996
TCONS_00025874 mRNA downstream 332349 40993196 ~ 41051768 (+) False XLOC_013005
TCONS_00025875 mRNA downstream 332522 40993369 ~ 41047681 (+) True XLOC_013005
TCONS_00025876 mRNA downstream 571872 41232719 ~ 41251084 (+) False XLOC_013007
TCONS_00025877 mRNA downstream 571872 41232719 ~ 41309805 (+) False XLOC_013007
TCONS_00025878 mRNA downstream 590091 41250938 ~ 41310976 (+) True XLOC_013007
TCONS_00025872 other upstream 7482 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025863 other upstream 176756 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025854 other upstream 619772 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025852 other upstream 907157 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025838 other upstream 1648893 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025882 other downstream 851298 41512145 ~ 41526488 (+) False XLOC_013010
TCONS_00025883 other downstream 851312 41512159 ~ 41520460 (+) False XLOC_013010
TCONS_00025892 other downstream 921944 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025893 other downstream 996640 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025894 other downstream 1007337 41668184 ~ 41668309 (+) True XLOC_013016

Expression Profile

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