RNA id: TCONS_00025874


Basic Information

Item Value
RNA id TCONS_00025874
length 807
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_013005
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40993196 ~ 41051768 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAACAGAAGTTTCCTCCGAAAGTAAAACTAAGAACAACATCACTAAGGAGAGATGCAGCTGAGCTCGTCCACTTTGCTCAGATAAGGAGGAGAAAAGCTCAGTGGCTGGTTTCTGGGATGTTAAGTCTGTCTTTGCTAATAGTTGTGATGGGCATCTACATCAGTACACGCACGGAAAGTGTCAGCATCACAGGATACATTTCAGGCATTATTTTGGCGTTTGGATCGTTCTTGGGAGTTCTTGGACTGAGCTTGGAGGAAAACCGCAAACAGCTGTTAGTTGCATCCATCGTGTTCCTGAGTTTTGGGATAATTTCCAGCTTCCTGTGTCTTCTGATTGATGGCGTTTTCATTCTGCTCAACATTGATATGCGTCCCATGAAGGCAGGAAGATGTCAGTTCTACACCAGTGGAAACAGTTACATCTATGAAAACTACTACGCTACAGTTCCCTGTCAAGGACTAACAGAGTCCTGTAATATGAAAGTTCGCAGTGGAACGTGTTACTGTTGTGATTTGTATGATTGTGCCAATGGAGGATATCTGAATAATTACTATGAGTTTGTGGGTGTGCAGAGCTGTCAGGAGGTGCTCTCTCTGTATGTTCTACTCTGGGTTTTAACTGCTCTCAACCTGCTGGCCTTCGTGCTTGGGATCCTGACCACTGCTGTACTGGGCAGTATCAAAGACATGGTGAGTCatgaacactCACACTTCAGTTTAATTTTGTCAATAGATGTCCACAATTGTAAAAACCACAGACATCCCAATCCTTCCCAAATCTGTACAGAGAATGTCAGATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000115111

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027148 lncRNA upstream 90589 40901898 ~ 40902607 (+) True XLOC_013004
TCONS_00027147 lncRNA upstream 230145 40760641 ~ 40763051 (+) True XLOC_013003
TCONS_00027146 lncRNA upstream 323460 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00026926 lncRNA upstream 472568 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027144 lncRNA upstream 1361171 39621465 ~ 39632025 (+) False XLOC_012984
TCONS_00027149 lncRNA downstream 136971 41188739 ~ 41193714 (+) False XLOC_013006
TCONS_00026927 lncRNA downstream 137022 41188790 ~ 41227202 (+) False XLOC_013006
TCONS_00026928 lncRNA downstream 137059 41188827 ~ 41227202 (+) True XLOC_013006
TCONS_00025881 lncRNA downstream 460334 41512102 ~ 41526488 (+) False XLOC_013010
TCONS_00025885 lncRNA downstream 468392 41520160 ~ 41526488 (+) False XLOC_013010
TCONS_00025873 mRNA upstream 332349 40643660 ~ 40660847 (+) True XLOC_013001
TCONS_00025871 mRNA upstream 355100 40617717 ~ 40638096 (+) False XLOC_013000
TCONS_00025870 mRNA upstream 380007 40609153 ~ 40613189 (+) True XLOC_012999
TCONS_00025869 mRNA upstream 388833 40584288 ~ 40604363 (+) True XLOC_012998
TCONS_00025868 mRNA upstream 410092 40572294 ~ 40583104 (+) True XLOC_012997
TCONS_00025876 mRNA downstream 180951 41232719 ~ 41251084 (+) False XLOC_013007
TCONS_00025877 mRNA downstream 180951 41232719 ~ 41309805 (+) False XLOC_013007
TCONS_00025878 mRNA downstream 199170 41250938 ~ 41310976 (+) True XLOC_013007
TCONS_00025879 mRNA downstream 262231 41313999 ~ 41465606 (+) True XLOC_013008
TCONS_00025880 mRNA downstream 444073 41495841 ~ 41509800 (+) True XLOC_013009
TCONS_00025872 other upstream 357018 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025863 other upstream 526292 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025854 other upstream 969308 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025852 other upstream 1256693 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025838 other upstream 1998429 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025882 other downstream 460377 41512145 ~ 41526488 (+) False XLOC_013010
TCONS_00025883 other downstream 460391 41512159 ~ 41520460 (+) False XLOC_013010
TCONS_00025892 other downstream 531023 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025893 other downstream 605719 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025894 other downstream 616416 41668184 ~ 41668309 (+) True XLOC_013016

Expression Profile

//