RNA id: TCONS_00026928


Basic Information

Item Value
RNA id TCONS_00026928
length 596
lncRNA type read_through
GC content 0.44
exon number 3
gene id XLOC_013006
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 41188739 ~ 41227202 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGAGATCCCCACCGTCAATTTCACACCTTCAGCCAGGGGAGGAGGCCCCGGCAGAAGACCTTGGACATGCTAGAGAGACTATGTCTCTGGGCTTgcctgggaatgcctcaggaTCCCCTCGGAGGTGCTGGAGGATATGTCTGGGGAAAAGGAAGCACTCTTCTGGGATTCTCTCATGAGACTGCTGCCCCGGCGACCTGGGCTCAGGAGAAGCCGTGCTGACAGGATCTTTCTCATGGTAAAACCCAAAGAAGATTTTCTTCCAACCCATGACCTTTGCCAGCATCTCCATGTCTTCAGTTATCCCATCACAGTGACCAAGCACAGTCTTCTTCCAGATCTCCTCCGAGTTACACAGCTGATTAATAAAAGTACATGTCAAACTCCATAAGTTCTGATGTTTAAAACTAAGATTTGTTTGTGAGTATTGATGCTTTTAATTACATTCACTATTAATAACCTATTAAACAAATGAATCGTTACATGCATGTTGCTAGCATTTAGCTTTAGCCCATGTGGAAATCTGATATGGCCATATATGAATTATCttaaaatatagttaatatatTTGAACGTATACTTGtacaaaatgac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027148 lncRNA upstream 286220 40901898 ~ 40902607 (+) True XLOC_013004
TCONS_00027147 lncRNA upstream 425776 40760641 ~ 40763051 (+) True XLOC_013003
TCONS_00027146 lncRNA upstream 519091 40668067 ~ 40669736 (+) True XLOC_013002
TCONS_00026926 lncRNA upstream 668199 40518736 ~ 40520628 (+) True XLOC_012994
TCONS_00027145 lncRNA upstream 1556802 39621474 ~ 39632025 (+) True XLOC_012984
TCONS_00025881 lncRNA downstream 284900 41512102 ~ 41526488 (+) False XLOC_013010
TCONS_00025885 lncRNA downstream 292958 41520160 ~ 41526488 (+) False XLOC_013010
TCONS_00025886 lncRNA downstream 293576 41520778 ~ 41522512 (+) True XLOC_013010
TCONS_00027150 lncRNA downstream 844526 42071728 ~ 42077328 (+) False XLOC_013021
TCONS_00027151 lncRNA downstream 844529 42071731 ~ 42091211 (+) True XLOC_013021
TCONS_00025874 mRNA upstream 137059 40993196 ~ 41051768 (+) False XLOC_013005
TCONS_00025875 mRNA upstream 141146 40993369 ~ 41047681 (+) True XLOC_013005
TCONS_00025873 mRNA upstream 527980 40643660 ~ 40660847 (+) True XLOC_013001
TCONS_00025871 mRNA upstream 550731 40617717 ~ 40638096 (+) False XLOC_013000
TCONS_00025870 mRNA upstream 575638 40609153 ~ 40613189 (+) True XLOC_012999
TCONS_00025876 mRNA downstream 5517 41232719 ~ 41251084 (+) False XLOC_013007
TCONS_00025877 mRNA downstream 5517 41232719 ~ 41309805 (+) False XLOC_013007
TCONS_00025878 mRNA downstream 23736 41250938 ~ 41310976 (+) True XLOC_013007
TCONS_00025879 mRNA downstream 86797 41313999 ~ 41465606 (+) True XLOC_013008
TCONS_00025880 mRNA downstream 268639 41495841 ~ 41509800 (+) True XLOC_013009
TCONS_00025872 other upstream 552649 40633527 ~ 40636178 (+) True XLOC_013000
TCONS_00025863 other upstream 721923 40466790 ~ 40466904 (+) True XLOC_012992
TCONS_00025854 other upstream 1164939 40023772 ~ 40023888 (+) True XLOC_012988
TCONS_00025852 other upstream 1452324 39736389 ~ 39736503 (+) True XLOC_012986
TCONS_00025838 other upstream 2194060 38985920 ~ 38994767 (+) False XLOC_012976
TCONS_00025882 other downstream 284943 41512145 ~ 41526488 (+) False XLOC_013010
TCONS_00025883 other downstream 284957 41512159 ~ 41520460 (+) False XLOC_013010
TCONS_00025892 other downstream 355589 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025893 other downstream 430285 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025894 other downstream 440982 41668184 ~ 41668309 (+) True XLOC_013016

Expression Profile

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