Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025892 |
| length | 686 |
| RNA type | processed_transcript |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_013014 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 41560822 ~ 41591684 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0035173 | histone kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004715 | non-membrane spanning protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-010328-16 | Predicted to enable histone kinase activity and protein tyrosine kinase activity. Predicted to be involved in cellular response to DNA damage stimulus and histone phosphorylation. Predicted to act upstream of or within chromatin remodeling and phosphorylation. Predicted to be located in nucleus. Orthologous to human BAZ1B (bromodomain adjacent to zinc finger domain 1B). |
| ensembl_id | ENSDART00000162896 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025881 | lncRNA | upstream | 56303 | 41512102 ~ 41526488 (+) | False | XLOC_013010 |
| TCONS_00025885 | lncRNA | upstream | 56303 | 41520160 ~ 41526488 (+) | False | XLOC_013010 |
| TCONS_00025886 | lncRNA | upstream | 60279 | 41520778 ~ 41522512 (+) | True | XLOC_013010 |
| TCONS_00026927 | lncRNA | upstream | 355589 | 41188790 ~ 41227202 (+) | False | XLOC_013006 |
| TCONS_00026928 | lncRNA | upstream | 355589 | 41188827 ~ 41227202 (+) | True | XLOC_013006 |
| TCONS_00027150 | lncRNA | downstream | 486153 | 42071728 ~ 42077328 (+) | False | XLOC_013021 |
| TCONS_00027151 | lncRNA | downstream | 486156 | 42071731 ~ 42091211 (+) | True | XLOC_013021 |
| TCONS_00026929 | lncRNA | downstream | 1053493 | 42639068 ~ 42640691 (+) | False | XLOC_013022 |
| TCONS_00027152 | lncRNA | downstream | 1053498 | 42639073 ~ 42640074 (+) | True | XLOC_013022 |
| TCONS_00027153 | lncRNA | downstream | 1067579 | 42653154 ~ 42653955 (+) | True | XLOC_013023 |
| TCONS_00025889 | mRNA | upstream | 23373 | 41549764 ~ 41559418 (+) | True | XLOC_013013 |
| TCONS_00025888 | mRNA | upstream | 35473 | 41542542 ~ 41547318 (+) | True | XLOC_013012 |
| TCONS_00025887 | mRNA | upstream | 43535 | 41527877 ~ 41539256 (+) | True | XLOC_013011 |
| TCONS_00025884 | mRNA | upstream | 56303 | 41512185 ~ 41526488 (+) | False | XLOC_013010 |
| TCONS_00025880 | mRNA | upstream | 72991 | 41495841 ~ 41509800 (+) | True | XLOC_013009 |
| TCONS_00025896 | mRNA | downstream | 182782 | 41768357 ~ 41800595 (+) | False | XLOC_013018 |
| TCONS_00025897 | mRNA | downstream | 186899 | 41772474 ~ 41808741 (+) | True | XLOC_013018 |
| TCONS_00025898 | mRNA | downstream | 234464 | 41820039 ~ 41838419 (+) | True | XLOC_013019 |
| TCONS_00025901 | mRNA | downstream | 1384633 | 42970208 ~ 43225932 (+) | False | XLOC_013027 |
| TCONS_00025903 | mRNA | downstream | 1598174 | 43183749 ~ 43226503 (+) | True | XLOC_013027 |
| TCONS_00025882 | other | upstream | 56303 | 41512145 ~ 41526488 (+) | False | XLOC_013010 |
| TCONS_00025883 | other | upstream | 62331 | 41512159 ~ 41520460 (+) | False | XLOC_013010 |
| TCONS_00025872 | other | upstream | 946613 | 40633527 ~ 40636178 (+) | True | XLOC_013000 |
| TCONS_00025863 | other | upstream | 1115887 | 40466790 ~ 40466904 (+) | True | XLOC_012992 |
| TCONS_00025854 | other | upstream | 1558903 | 40023772 ~ 40023888 (+) | True | XLOC_012988 |
| TCONS_00025893 | other | downstream | 71912 | 41657487 ~ 41659824 (+) | True | XLOC_013015 |
| TCONS_00025894 | other | downstream | 82609 | 41668184 ~ 41668309 (+) | True | XLOC_013016 |
| TCONS_00025895 | other | downstream | 127501 | 41713076 ~ 41713190 (+) | True | XLOC_013017 |
| TCONS_00025899 | other | downstream | 346144 | 41931719 ~ 41931833 (+) | True | XLOC_013020 |
| TCONS_00025900 | other | downstream | 1188019 | 42773594 ~ 42778763 (+) | False | XLOC_013025 |
