RNA id: TCONS_00027150


Basic Information

Item Value
RNA id TCONS_00027150
length 460
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_013021
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 42071728 ~ 42091211 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCGCAGATCAGCTGGTGTCCATCTTTAATCAGCTCTTTGATGAACTTGTTGGTTCGATCCAGCTCGATTTCATGACATTTGAGTCTTTCTCTAAAATCCGGACTATCCACAAACGAGTCACTGAACTCTAACGTCGGCAACCCCATAATCCCAGCTGAACTAAAGCTTCATAAAACAACGAACTGCGGTTTCCTCAAAGACACTGACCGATCCGTGTCATCGTCGTACTCATCTTCCTCGACATCCTCTTCCAAAGCTGAACGCGGGAACTTGTTGCTGCTCTCTTGCAGAGATTCAGGCGAAAAGTTTCTGTCTTCACTTCCGCGCTCTGAACTTTCATCCAGACAAACTTCTGCAGTCTGCAGAGCCAAACTGAGTTCATGAGACTCCTGCTGGCTGCATTAGAAAACACCCCGGCATCTGTAAATCTactcgaacctcgtcattgtggtcaact

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025881 lncRNA upstream 545240 41512102 ~ 41526488 (+) False XLOC_013010
TCONS_00025885 lncRNA upstream 545240 41520160 ~ 41526488 (+) False XLOC_013010
TCONS_00025886 lncRNA upstream 549216 41520778 ~ 41522512 (+) True XLOC_013010
TCONS_00026927 lncRNA upstream 844526 41188790 ~ 41227202 (+) False XLOC_013006
TCONS_00026928 lncRNA upstream 844526 41188827 ~ 41227202 (+) True XLOC_013006
TCONS_00026929 lncRNA downstream 561740 42639068 ~ 42640691 (+) False XLOC_013022
TCONS_00027152 lncRNA downstream 561745 42639073 ~ 42640074 (+) True XLOC_013022
TCONS_00027153 lncRNA downstream 575826 42653154 ~ 42653955 (+) True XLOC_013023
TCONS_00026930 lncRNA downstream 694988 42772316 ~ 42772733 (+) True XLOC_013024
TCONS_00027154 lncRNA downstream 696266 42773594 ~ 42779530 (+) True XLOC_013025
TCONS_00025898 mRNA upstream 233309 41820039 ~ 41838419 (+) True XLOC_013019
TCONS_00025897 mRNA upstream 262987 41772474 ~ 41808741 (+) True XLOC_013018
TCONS_00025896 mRNA upstream 271133 41768357 ~ 41800595 (+) False XLOC_013018
TCONS_00025891 mRNA upstream 480044 41561285 ~ 41591684 (+) False XLOC_013014
TCONS_00025890 mRNA upstream 480313 41560822 ~ 41591415 (+) False XLOC_013014
TCONS_00025901 mRNA downstream 892880 42970208 ~ 43225932 (+) False XLOC_013027
TCONS_00025903 mRNA downstream 1106421 43183749 ~ 43226503 (+) True XLOC_013027
TCONS_00025904 mRNA downstream 1288562 43365890 ~ 43440181 (+) True XLOC_013028
TCONS_00025907 mRNA downstream 1813723 43891051 ~ 43894087 (+) True XLOC_013031
TCONS_00025910 mRNA downstream 2003620 44080948 ~ 44120157 (+) True XLOC_013034
TCONS_00025899 other upstream 139895 41931719 ~ 41931833 (+) True XLOC_013020
TCONS_00025895 other upstream 358538 41713076 ~ 41713190 (+) True XLOC_013017
TCONS_00025894 other upstream 403419 41668184 ~ 41668309 (+) True XLOC_013016
TCONS_00025893 other upstream 411904 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025892 other upstream 486153 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025900 other downstream 696266 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025902 other downstream 1104381 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025908 other downstream 1929244 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025911 other downstream 2041809 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025912 other downstream 2076346 44153674 ~ 44154271 (+) True XLOC_013036

Expression Profile

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