RNA id: TCONS_00027151



Basic Information


Item Value
RNA id TCONS_00027151
length 612
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_013021
representative True

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 42071728 ~ 42091211 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCGCAGATCAGCTGGTGTCCATCTTTAATCAGCTCTTTGATGAACTTGTTGGTTCGATCCAGCTCGATTTCATGACATTTGAGTCTTTCTCTAAAATCCGGACTATCCACAAACGAGTCACTGAACTCTAACGTCGGCAACCCCATAATCCCAGCTGAACTAAAGCTTCATAAAACAACGAACTGCGGTTTCCTCAAAGACACTGACCGATCCGTGTCATCGTCGTACTCATCTTCCTCGACATCCTCTTCCAAAGCTGAACGCGGGAACTTGTTGCTGCTCTCTTGCAGAGATTCAGGCGAAAAGTTTCTGTCTTCACTTCCGCGCTCTGAACTTTCATCCAGACAAACTTCTGCAGTCTGCAGAGCCAAACTGAGTTCATGAGACTCCTGCTGGCTGCATTAGAAAACACCCCGGCATCTGTAAATCTaacaaatcaaataaatatggATATTGACGTTTGAAAATATCGATTCCATACCACCCATTGACTTCAGCTGATGTTGCATTTCAAATGTTCTTCCTACCATTTCTTCAGTTCTCCATCTGGATGTTGAGATCTGGACCCTCTGCTGTGCCGAGGGCTCTGGGTGTTACATCCCTCAGCGCCTG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00025881 lncRNA upstream 545243 41512102 ~ 41526488 (+) False XLOC_013010
TCONS_00025885 lncRNA upstream 545243 41520160 ~ 41526488 (+) False XLOC_013010
TCONS_00025886 lncRNA upstream 549219 41520778 ~ 41522512 (+) True XLOC_013010
TCONS_00026927 lncRNA upstream 844529 41188790 ~ 41227202 (+) False XLOC_013006
TCONS_00026928 lncRNA upstream 844529 41188827 ~ 41227202 (+) True XLOC_013006
TCONS_00026929 lncRNA downstream 547857 42639068 ~ 42640691 (+) False XLOC_013022
TCONS_00027152 lncRNA downstream 547862 42639073 ~ 42640074 (+) True XLOC_013022
TCONS_00027153 lncRNA downstream 561943 42653154 ~ 42653955 (+) True XLOC_013023
TCONS_00026930 lncRNA downstream 681105 42772316 ~ 42772733 (+) True XLOC_013024
TCONS_00027154 lncRNA downstream 682383 42773594 ~ 42779530 (+) True XLOC_013025
TCONS_00025898 mRNA upstream 233312 41820039 ~ 41838419 (+) True XLOC_013019
TCONS_00025897 mRNA upstream 262990 41772474 ~ 41808741 (+) True XLOC_013018
TCONS_00025896 mRNA upstream 271136 41768357 ~ 41800595 (+) False XLOC_013018
TCONS_00025891 mRNA upstream 480047 41561285 ~ 41591684 (+) False XLOC_013014
TCONS_00025890 mRNA upstream 480316 41560822 ~ 41591415 (+) False XLOC_013014
TCONS_00025901 mRNA downstream 878997 42970208 ~ 43225932 (+) False XLOC_013027
TCONS_00025903 mRNA downstream 1092538 43183749 ~ 43226503 (+) True XLOC_013027
TCONS_00025904 mRNA downstream 1274679 43365890 ~ 43440181 (+) True XLOC_013028
TCONS_00025907 mRNA downstream 1799840 43891051 ~ 43894087 (+) True XLOC_013031
TCONS_00025910 mRNA downstream 1989737 44080948 ~ 44120157 (+) True XLOC_013034
TCONS_00025899 other upstream 139898 41931719 ~ 41931833 (+) True XLOC_013020
TCONS_00025895 other upstream 358541 41713076 ~ 41713190 (+) True XLOC_013017
TCONS_00025894 other upstream 403422 41668184 ~ 41668309 (+) True XLOC_013016
TCONS_00025893 other upstream 411907 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025892 other upstream 486156 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025900 other downstream 682383 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025902 other downstream 1090498 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025908 other downstream 1915361 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025911 other downstream 2027926 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025912 other downstream 2062463 44153674 ~ 44154271 (+) True XLOC_013036