RNA id: TCONS_00027152


Basic Information

Item Value
RNA id TCONS_00027152
length 885
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_013022
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 42639068 ~ 42640691 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCATGCTGCTGACAAATTTAGCTCTTGTCCATGTGTCATGTTTGGAAAAACCAAGTCAAGTCTAACTTTGTTAAGCTAAGTTCAATTTgactacaaaataaaatacaagacaGCATGACACTTAACCAGACCTATCTCTATTTACACATGTAAATGATAATTTTTggtcaaatataaacaaacaacttttttttttttttttttttaagtgcagttAAGTGAGCATCGTTACTCCCTAATTTTCATGCAGAATTTTGTGACTTTTCAGAGAGTAAATGTTTaagtacactggaaaaaaaatgtgGTTAATCATGGAGGCGGTCATTTTAAAGACTGTCTCAGTTTCCTGTCCACTGAATACAGGAACTGCTTGAGATGCACATCTAGATTCTATAGTCACTTTTATTGGCTAATGACCAATCAGAAACTGTCTCGGAGAAATGTTATACTATAACACACAGGTGAAATTTACATAGAATCTGGCTTGCATCAAGTTTTAGGCAGATGAGATGTAATATCATATCCTTCTTCCAAGGATAAGGGATTAAAGGCCTATTTGAAGCAGGAACAGATGACAACAAAGTCTAATTACAGGTTTACAGTTTTAAGATTTCAAGTTTTTAAGATATTAATGCTCTCTTCCAGAAGGCCCATGGGATCTGACTCTTCTTACCTTTCCTTGCTCTTTCAAGTCTACATCCCATCGTGAAGCCAGCAGTTGTTACATGAGGGtcacctcagggtaccatccCAGACAGGCACAAAATCACTTTCCTGGACCTTTTCATTCACTGTTTCTCAATGGTAGAATGATCTCCTCAACCTCTTGTGAAATGTCAAATCCCTGACAATACTCATGAGTTTTCACTTTTCTCTTATCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027151 lncRNA upstream 547862 42071731 ~ 42091211 (+) True XLOC_013021
TCONS_00027150 lncRNA upstream 561745 42071728 ~ 42077328 (+) False XLOC_013021
TCONS_00025881 lncRNA upstream 1112585 41512102 ~ 41526488 (+) False XLOC_013010
TCONS_00027153 lncRNA downstream 13080 42653154 ~ 42653955 (+) True XLOC_013023
TCONS_00026930 lncRNA downstream 132242 42772316 ~ 42772733 (+) True XLOC_013024
TCONS_00027154 lncRNA downstream 133520 42773594 ~ 42779530 (+) True XLOC_013025
TCONS_00027155 lncRNA downstream 147239 42787313 ~ 42792357 (+) True XLOC_013026
TCONS_00027156 lncRNA downstream 810013 43450087 ~ 43456039 (+) True XLOC_013029
TCONS_00025898 mRNA upstream 800654 41820039 ~ 41838419 (+) True XLOC_013019
TCONS_00025897 mRNA upstream 830332 41772474 ~ 41808741 (+) True XLOC_013018
TCONS_00025896 mRNA upstream 838478 41768357 ~ 41800595 (+) False XLOC_013018
TCONS_00025891 mRNA upstream 1047389 41561285 ~ 41591684 (+) False XLOC_013014
TCONS_00025890 mRNA upstream 1047658 41560822 ~ 41591415 (+) False XLOC_013014
TCONS_00025901 mRNA downstream 330134 42970208 ~ 43225932 (+) False XLOC_013027
TCONS_00025903 mRNA downstream 543675 43183749 ~ 43226503 (+) True XLOC_013027
TCONS_00025904 mRNA downstream 725816 43365890 ~ 43440181 (+) True XLOC_013028
TCONS_00025907 mRNA downstream 1250977 43891051 ~ 43894087 (+) True XLOC_013031
TCONS_00025910 mRNA downstream 1440874 44080948 ~ 44120157 (+) True XLOC_013034
TCONS_00025899 other upstream 707240 41931719 ~ 41931833 (+) True XLOC_013020
TCONS_00025895 other upstream 925883 41713076 ~ 41713190 (+) True XLOC_013017
TCONS_00025894 other upstream 970764 41668184 ~ 41668309 (+) True XLOC_013016
TCONS_00025893 other upstream 979249 41657487 ~ 41659824 (+) True XLOC_013015
TCONS_00025892 other upstream 1053498 41582791 ~ 41585575 (+) True XLOC_013014
TCONS_00025900 other downstream 133520 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025902 other downstream 541635 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025908 other downstream 1366498 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025911 other downstream 1479063 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025912 other downstream 1513600 44153674 ~ 44154271 (+) True XLOC_013036

Expression Profile

//