RNA id: TU396


Basic Information

Item Value
RNA id TU396
length 456
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G332
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 370116 ~ 370571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgatggaacagtagtggagagggtagcaagttttaagttcctcggcatacacatcacagacaaactgaattggtccactcacacagacagcattgtgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaattcggcttgtcaccaaaagcactcacaaacttctacagatgcacaatcgagagcatcctggcgggctgtatcaccgcctggtacggcaactgctccgccctcaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacatcaaccacccaagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407 lncRNA downstream 6904 362993 ~ 363212 (-) True G339
TU406 lncRNA downstream 7756 362151 ~ 362360 (-) True G338
TU405 lncRNA downstream 11468 350792 ~ 358648 (-) True G337
TU352 lncRNA downstream 24707 344957 ~ 345409 (-) True G291
TU394 lncRNA downstream 32522 334352 ~ 337594 (-) True G331
TU412 lncRNA upstream 1669 372240 ~ 372511 (-) True G344
TU1424 lncRNA upstream 9186 379757 ~ 380040 (-) True G1126
TU1425 lncRNA upstream 9682 380253 ~ 380569 (-) True G1127
TU1426 lncRNA upstream 10366 380937 ~ 381212 (-) True G1128
TU1428 lncRNA upstream 13138 383709 ~ 383928 (-) True G1130
XM_021583381.2 mRNA downstream 64069 260364 ~ 306047 (-) True tmem45a
XM_021583490.2 mRNA downstream 126497 237111 ~ 243619 (-) False sft2d2a
XM_036976771.1 mRNA downstream 172689 32649 ~ 197427 (-) False LOC110523811
XM_036977352.1 mRNA upstream 132181 502752 ~ 504254 (-) True LOC118964585
XM_036977465.1 mRNA upstream 262715 633286 ~ 681917 (-) False plcxd1
XM_036977490.1 mRNA upstream 262715 633286 ~ 681917 (-) False plcxd1
XM_036977605.1 mRNA upstream 331955 702526 ~ 721187 (-) False LOC110520928
XM_036977642.1 mRNA upstream 331955 702526 ~ 721396 (-) False LOC110520928
TU323 other downstream 126693 237129 ~ 243423 (-) True sft2d2a
TU247 other downstream 344443 25269 ~ 25673 (-) True G202
TU1544 other upstream 279380 649951 ~ 681896 (-) True plcxd1
TU1695 other upstream 599614 970185 ~ 976099 (-) False G1355
TU1693 other upstream 599835 970406 ~ 974095 (-) False G1355
TU1694 other upstream 599835 970406 ~ 972696 (-) False G1355
TU2151 other upstream 1382674 1753245 ~ 1760430 (-) True G1651

Expression Profile