RNA id: TU68821


Basic Information

Item Value
RNA id TU68821
length 4309
RNA type TUCP
GC content 0.42
exon number 2
gene id G61978
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56524970 ~ 56533975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatttagttcagttacctttccCTTCTTGAGTATAGGAACATCTTGAAGTGCTAtcgccccacaagggtgcatgctcagctaCTCCTGTAatcccatgactgcatggccatgcacgcaaCCAAATAAATcaacaagtttgcagacgacacaacagtaatgGCCTTGATTACCAACACCGACGAgaccgcctacagggaggaagtgagggcactcggagtgtggtgtcaggaaaacaacctgtcaatcaacgtcaacaaaacaaaggagatgatcgcggactccaggaaacagcagagggagcacccccctatccacatcgacgagacagtagtgaaggtggaacgtttttttaagttcctcggcgtacacatcacagacaaactgaaatggtacacccacacagacagtgtggtgaagaaggctcaacAGAAATGTGGCTTATCACctaaaccctcacaaacctttacagatgcacaattgagagcatcatgTCAGGCtgtaccctccaggacacctacagcacccgatatcacaggaaggccaaaaagatcatcaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagcagggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacacacggactcaactccagccactttaataatgggaattgatggaaattgatggaaaatatatcactagccactttaaacaatgctacttaatattaatataatgtttaaataccctacattactcatctcatatgtatatgtatatactgtactctatatcatctactgcatctttatgtaatacatgtatcactagccactttaaactatgccactttgtttacataccctacattactcatctcatatgtatatactgtactcgataccatctactgcatcttgcctatgccgttctgtaccatcactcattcatgtatctttatgtacatattctttatccctttacacttgtgtgtataaggtagtagtttggaatttttaggttagattactcgttggttattactgcattgtcggaactagaagcacaagcattttctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaatttgatttgatttgatttatctgcCCGGAACAGTTGAAATCCAGATTCATCAGTGAAGagtacacttctccagcgtgccagaggccatcaaaggtgagcgtTTTCCCACTGATGTTGGTTACTACGCCGGACTGCgttcaggtcaagaccctggtgaggacaacaacCACGCAAATGTGCTTCCCTGAGATAggttgtgcagaaattattcagttgtgcgaacccacagtttcatcagctgtctgggtggctgatctcagttgaagaagccggatgtggaggtcctgtgttggcgtggttacacaagGTCTGCGGGTTGTGAGGCAGATTGGACATACTGTTGACGTactgttgcgttcatatttttgttcagtatatttacatTTAAGTTGGTATGTTCTTACCTCTGCGGCCCAAATTTGGCACTGTTGGGCTGTTGTAGTGTCTCACTCCTGGCCCTTTTTGAATCAAtaactgttactgtaatttaattatgccaatgtgctttcatcaattgaaagcccttaatctattttatgagaatttctaagatttcttgtttgcataaaatagacacagaccagtctttcaataataggtaatagaatttattctcggagcgcgctcccACTTAATCACGTGCAGCAGTTTATATACagatcatgacgtcatttcaatgctttaacagaatcccctcctctcaaccGGGACAAAgtaaggtgaaaagttcattctaacttactaacacactcccagataacttttgacccctgaacattatcgatcaccactgaactgacagttttaataacagaaaacctaggaatgcattcactgccttatctaaaaaccccagagctaagtttctgTAGGGTCAACCATAGGCTAACGACCTTATCTGTTTTCACAGTCCACAACCCATAtagttaatcagatataataaaacagagtataagtttacttagttacagttccatttaaaattaTTTGTTCAGTCATATTAATCATAATTTCCTAACAATCCACCCTCAAAATGACTTAACAACTCATGCCATCATTAAACACTACATGGAAATATCAATGATATACTAAAAGAAGACCACCAATACATGTATGTACATAATCAACTTCAATGACTGTTCTATCCTACATCAGAATCTTAATTCTACTTATCAGGATTTTCTGTTAATCTTCATGAAAAAACAGTCTATACATTGAAACAAGAAAACATCTAAATTTCCTAAACATCAAATATGGTCTCCTCGCGAGTGAAAGGATCCGGATTCTTCTATTACGTCCAAGCCATGTATTTTGTATTCCACTGGTCAGAGCTTAGGATTGGACCATATATCACCATCTGAAGTGTCATCGATTTCTCCAGAGTCCTGGAAATGATAACTTTCATACACGCAATCAACCACGTCCGTACAAaactaacacagtcacacaggtgaaGGTAGCCCATAACACAGTAATCATAACATTTTTACTATTCTATTCTGCCAAGTCATTCATTACATCTCTAATATAATTGGTGAAGCGCTGTGGATTTTTAATAGATATAATTGATCCAATCCACATTCTCATTAAGAGTGGACCACCACAAAATACTTGACTCTAATCCTACCAGGATCTAATTTATAGCTTTGATCTCATCTGCCACCCTTGGAACCACAATGTTATTAATACAAACCCTATCATCAAAAGACCCAGTCGAAGTACTTATCTTCTCCCGTTTAGTCAACACCACAACCAACAGATGTGAGCCCTGGGCCTCCTTATCTTACTGAAATCCCCAgatgtcacgagtccgaccgagggtgtttccctttcccgggcaggtggcgctcggcggtcgtcgtcaccggcctattagctgccactgattgtttttccttcccctccttgtatgttgagtggtagcacctgtgaatgtttaattagtttgtctttattagacagccggcccgcctggttgttgtgcgggattatttctatgtaaaccttcggctctgtggtataggcacgtgttagtgtccggtcgggattgtttcccattgtacattttgattccctgtgttttgggaacgtaacgtttttgtgagcaccctgtggtgcattggtgcgattaaaagacgcgcagcattgaactctctgtctcctgcatttgactccacacccacgacacccggagcattacaccAGATCTCAAGAGAGTCTGCCAAAACACTCATTGGTCGTATCAAAAGTAACATTATCTGTCCTATTGCAGTACTGATTTTGCCCCACATATTTCCCAGGAGTACTATACTGAATCAAACAATAAACAGTCTCCCGTTGCCTCTGTGAAAGGAGGAAGCTCAGATTTCAGAGGAACATGTGGATATAAATAGTGCAAATCCATACAACATATTATCTGGCTTTCCTGCTTCCATGAATAGCTTTACCATACAGGTTGTTCCCTTGGTTGAATAATTCCATTTCTGAACTATCCACACCGGCTCTTGGCTCTGGACAACTCCACAGTCAGTATCTGTTTTGTCAGGGACTCTGCTTGTATTCTGCTGACTATAGAGCAATCAGCTGCTCTAACTTTTTCTACCTGGAATGCACTAGGTTATCAACTGAAACCCTTACTTTCACTaccctccatctccttccatgCTGGGTATGTAGATTTATGTAGCCTTCTCACATGATGTGAGCTATAACATGTTCCATAATAGCTACTCTTAGTCCTGAACTGCCAAGGAGTCAGAGACATCACTTGGTCTACATAGAACTTCACTGAGACATCCCTCCCTATCCTACTCTCACCTCCTGTTTATCCAGATCAAGTGATCTCTTATGCTTGGTTAATACTAATTTCTCCTTGTTTAATTATGTCAATATTACCCTCTGGCCTTCTCGGGTTCATGGTGTAGGAATAAGGTCTCCAACCATACAGCTTAGGATGGACAGCTCACCTATAAAGCCACACCCTCTTCCAGAAAACACATCATTAGCAAGAGTCAGACACATTTTCACTTCTATGAACAAGAACAGTGAGGAAAGGACAGGTAAGGTATTTttcattcgagagatggcccccAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68813 lncRNA downstream 29561 56494084 ~ 56495409 (-) True G61976
TU68810 lncRNA downstream 31833 56488406 ~ 56493137 (-) True G61975
TU68808 lncRNA downstream 31959 56488406 ~ 56493011 (-) False G61975
TU68702 lncRNA downstream 40719 56482665 ~ 56484251 (-) True G61877
TU68695 lncRNA downstream 49342 56473369 ~ 56475628 (-) True G61871
TU68862 lncRNA upstream 35487 56569462 ~ 56598254 (-) True G62009
TU68884 lncRNA upstream 64693 56598668 ~ 56598996 (-) True G62026
TU68888 lncRNA upstream 68578 56602553 ~ 56602811 (-) True G62030
TU68892 lncRNA upstream 73412 56607387 ~ 56608282 (-) True G62034
TU68893 lncRNA upstream 74443 56608418 ~ 56608709 (-) True G62035
XM_021605162.2 mRNA downstream 377566 55901898 ~ 56147404 (-) False LOC110525190
XM_021605194.2 mRNA downstream 377566 55901898 ~ 56147404 (-) False LOC110525190
XM_036980672.1 mRNA downstream 397174 55901897 ~ 56127796 (-) False LOC110525190
XR_005052192.1 mRNA downstream 445187 56069205 ~ 56079783 (-) True LOC110525232
XR_002473726.2 mRNA downstream 445297 56069205 ~ 56079673 (-) False LOC110525232
XM_021599100.2 mRNA upstream 1694 56535669 ~ 56544298 (-) True LOC110521481
XM_021605723.2 mRNA upstream 257646 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 257646 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 257646 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 257646 56791621 ~ 56873359 (-) False smoc2
TU68495 other downstream 371052 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 691610 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1321228 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1331247 55193297 ~ 55193723 (-) True G60614
TU67257 other downstream 1370712 55150241 ~ 55154258 (-) True G60572
TU70000 other upstream 501692 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 518123 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 863219 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 2250767 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2610398 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile