RNA id: TU68900


Basic Information

Item Value
RNA id TU68900
length 716
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G62042
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56620770 ~ 56621485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTACGACAGTGTACAAGTGGAACGGCAATGGGTTCTACTCGCACCAGTCCCTGCACCCGTGGTAACCCGACACTGATGTGGAGTACATAGAGATCTCGTCCAAGCCCCACCTGGTCCTCTCCAGCAACTCACATCGCCCCATTTTGGGTTGTTTTGATTGGTTGATATATTGATTGCTAGGTAGGTGGAATTGAAAGCGGAGATGGTgcttgtcgtggaaatttcctctatttaccaaatcatgagagcaaaccacacacaagtcagagttagttatcacaaagtccatttttaattatatgagctctatcacaaccctgtgactctcagatcaattcagtgtctatcaatgaattctctgagagtcccttccacatttcaactgagatcctttatagcaaagacacacacaggataagacagcatcggcataattcatcgttcagctttgtctcctaaactatgttattttctcaaactcagaaccataaaccaatcctccatatcaacaggcatatatcaaatccatcctatcttgacaagatcacagagacacactgactggcacacagacattgtggagccaagagatacacgcttgacctctcccctctctccggcccaagcaacttagtcttgacatagaacagatactgtaaccccaccacagtattatacaaaaataacattctgatgagaagtaacttacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68893 lncRNA downstream 12061 56608418 ~ 56608709 (-) True G62035
TU68892 lncRNA downstream 12488 56607387 ~ 56608282 (-) True G62034
TU68888 lncRNA downstream 17959 56602553 ~ 56602811 (-) True G62030
TU68884 lncRNA downstream 21774 56598668 ~ 56598996 (-) True G62026
TU68862 lncRNA downstream 22516 56569462 ~ 56598254 (-) True G62009
TU68902 lncRNA upstream 306 56621791 ~ 56622004 (-) True G62044
TU68922 lncRNA upstream 19223 56640708 ~ 56640930 (-) True G62064
TU69103 lncRNA upstream 23603 56645088 ~ 56645508 (-) True G62236
TU69134 lncRNA upstream 61673 56683158 ~ 56702331 (-) True G62265
TU69184 lncRNA upstream 131733 56753218 ~ 56774399 (-) True G62314
XM_021599100.2 mRNA downstream 76472 56535669 ~ 56544298 (-) True LOC110521481
XM_021605194.2 mRNA downstream 473366 55901898 ~ 56147404 (-) False LOC110525190
XM_021605723.2 mRNA upstream 170136 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 170136 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 170136 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 170136 56791621 ~ 56873359 (-) False smoc2
XM_036980719.1 mRNA upstream 172798 56794283 ~ 56873384 (-) True smoc2
TU68821 other downstream 86795 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 466852 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 787410 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1417028 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1427047 55193297 ~ 55193723 (-) True G60614
TU70000 other upstream 414182 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 430613 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 775709 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 2163257 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2522888 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile