RNA id: TU70239


Basic Information

Item Value
RNA id TU70239
length 1295
RNA type TUCP
GC content 0.35
exon number 1
gene id G63328
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57397194 ~ 57398488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataaaacggtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgacaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgagtatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacttgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagtgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtattagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcccaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaagacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagtgaagtggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgctttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagaggcataccccaagcgactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70150 lncRNA downstream 129292 57267529 ~ 57267902 (-) True G63241
TU70147 lncRNA downstream 132524 57264445 ~ 57264670 (-) True G63238
TU70143 lncRNA downstream 140856 57255887 ~ 57256338 (-) True G63234
TU70122 lncRNA downstream 176396 57220517 ~ 57220798 (-) True G63213
TU70117 lncRNA downstream 183295 57213670 ~ 57213899 (-) True G63208
TU70241 lncRNA upstream 2717 57401205 ~ 57401445 (-) True G63330
TU70242 lncRNA upstream 3026 57401514 ~ 57401763 (-) True G63331
TU70248 lncRNA upstream 10619 57409107 ~ 57409355 (-) True G63337
TU70271 lncRNA upstream 36885 57435373 ~ 57435574 (-) True G63360
TU70281 lncRNA upstream 49583 57448071 ~ 57448302 (-) True G63370
XM_036980719.1 mRNA downstream 523810 56794283 ~ 56873384 (-) True smoc2
XM_021605727.2 mRNA downstream 523835 56791621 ~ 56873359 (-) False smoc2
XM_021605716.2 mRNA downstream 523836 56791621 ~ 56873358 (-) False smoc2
XM_021605723.2 mRNA downstream 523838 56791621 ~ 56873356 (-) False smoc2
XM_021605811.2 mRNA upstream 771002 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA upstream 771002 58169490 ~ 58282803 (-) False LOC110525582
XM_021605857.2 mRNA upstream 771002 58169490 ~ 58282803 (-) False LOC110525582
XM_021605866.2 mRNA upstream 771002 58169490 ~ 58282803 (-) False LOC110525582
XM_021605840.2 mRNA upstream 771002 58169490 ~ 58282804 (-) False LOC110525582
TU70000 other downstream 334346 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 334346 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 863219 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 1243276 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 1563834 55832825 ~ 55833360 (-) False G61563
TU72149 other upstream 1386254 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 1745885 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 3031719 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 4283790 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 4583243 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile