RNA id: TU105667



Basic Information


Item Value
RNA id TU105667
length 1129
lncRNA type intronic
GC content 0.39
exon number 2
gene id G95766
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85087607 ~ 85089075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTTCTGTGATCCTAGTGGAACTCTGAGACACACTAGAATGTTCTGTGATCATAGTGGAACTCTGAAACACACTAGAATGTTCTGTGATCATAGTGGAACTCTGAGACACACTAGAATGTTCTGTGGGTCACTGGTAACCCTAGAAGGAAGGACACACACAGCAACTTAACCAAGGAGGAGGCAACAGAAGCATTGGACTGTCATAAAAGGAATAGGTATTTTACAGAGTGAATAATGTAAAGTAAGCCATTGGTTGAATCTCCGGGGACAAGTTGCCCCACACTGATCTAAGATCCTAACCTTAGCCATTATACTACAGGTTAACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTATCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTTATAAAGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAAAGGTTTACTACCTGTTTACTGGTAGGGTAATAACGGTTTACTACCTGTTTACTGGTAGGGTTATAAAGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTAACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAACGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAACGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAACGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTCATAAAGGTTTACTACCTGTTTACTGGTAGGGTTATAAAGGTGTACTACCTGTTTACTGGTAGGGTTATAAAGGTTTACATCTTTGAAGTTGTTTGTGGtgagtatcaaagccaattacACATTTTCAAAATGGCGCTTAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105522 lncRNA downstream 92848 84994516 ~ 84994759 (-) True G95638
TU105519 lncRNA downstream 95337 84992036 ~ 84992270 (-) True G95635
TU105466 lncRNA downstream 170909 84916400 ~ 84916698 (-) True G95591
TU105449 lncRNA downstream 190998 84895195 ~ 84896609 (-) True G95574
TU105433 lncRNA downstream 213838 84872428 ~ 84873769 (-) True G95565
TU105676 lncRNA upstream 35187 85124262 ~ 85125756 (-) True G95774
TU105678 lncRNA upstream 39379 85128454 ~ 85129053 (-) True G95776
TU105681 lncRNA upstream 47912 85136987 ~ 85137262 (-) True G95779
TU105687 lncRNA upstream 65517 85154592 ~ 85155923 (-) True G95785
TU105689 lncRNA upstream 78046 85167121 ~ 85167410 (-) True G95787
XM_036987540.1 mRNA downstream 305728 84760098 ~ 84781879 (-) True LOC110522386
XM_036989962.1 mRNA downstream 755907 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 830658 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 830659 84157529 ~ 84256948 (-) False LOC110531033
XM_036989976.1 mRNA upstream 72675 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 82869 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 82869 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 93516 85182591 ~ 85207262 (-) False LOC110516660
XM_036987592.1 mRNA upstream 97801 85186876 ~ 85207269 (-) True LOC110516660
TU105500 other downstream 107335 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 358184 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 794024 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 794984 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 883143 84203487 ~ 84204464 (-) True G94821
TU105686 other upstream 68667 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 129318 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 160134 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 169321 85258396 ~ 85260532 (-) True LOC110510598
TU105927 other upstream 257783 85346858 ~ 85351766 (-) False G96002

Expression Profile