RNA id: TU137673


Basic Information

Item Value
RNA id TU137673
length 909
RNA type TUCP
GC content 0.35
exon number 1
gene id LOC110503718
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19131905 ~ 19259074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGACGCCTCGGCTGCCTCCTAAAAGCCAAGCCGTGGGCGTGACCCCAGTCCCTCTGCCCACTAACCCCCCGCTGCCACaaccctccccccctctcccctcatcctttTGGAGGAAGCGCCGGCCCAAGAAGCCCAAAGAGCCAGGCGGGCCTCTGTACGAGAACATCCTACCGCTGGGGcgcaggggaggaggaagggatggagcgagggatggtggagggaggaggggacgccccctctctcctcctctcccactccccgtAACCGTGCCCATGTCCCCCACCTacactcccccttccccctccaccTCACTCCCCTACACCAGCTcaacttcctcctcttcctctaacaCATCGtccacctcttcctctacctcctcctctcgctcctcctctccttcctcctcctcctccttgaccTCTCATAGCACGCGGGAAGGTTTGGACGCAGAGGAcgatgatgaggatgaggagcTGACCGAGGAGTCCAGTCTTCtcctggggagggggagggacagaCAACGTTCAATtatctcctctcgctctctcagtcacGGGCGCCAGCCACCACCTATACCACCCCGAAAACCACGCCCTGCCCGAGGGgcgagaaacagggagagggagagggagagaggaggtagccAGTTGGCCCAGTTACAGGAGTGGTGGGCGGGCtggggtgatagagagagggatcgcagtggaggaggagatgacGAGAGGAAacgagagaagaagaggaggaaagataaagagaagaagaaaaagaagaagaagaggaaaaagagggaggagagggaacgagagcgagacaaagagaggaagagacggagGGTGAAAAAGAAGCGGAAGAAGAAGGCgctgaagaagaggaagaaatcGTCTGGGCGTTCTGAGCAAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137724 lncRNA upstream 3994 19227193 ~ 19252592 (+) True G119392
TU137723 lncRNA upstream 23985 19227193 ~ 19232601 (+) False G119392
TU137732 lncRNA upstream 47355 19208413 ~ 19209231 (+) True G119398
TU137717 lncRNA upstream 61616 19194768 ~ 19194970 (+) True G119387
TU137716 lncRNA upstream 62352 19193249 ~ 19194234 (+) True G119386
TU137674 lncRNA downstream 161 19257655 ~ 19258056 (+) True LOC110503718
TU137745 lncRNA downstream 10595 19268089 ~ 19268303 (+) True G119411
TU137746 lncRNA downstream 11029 19268523 ~ 19269489 (+) True G119412
TU137747 lncRNA downstream 12768 19270262 ~ 19271313 (+) True G119413
TU137748 lncRNA downstream 13911 19271405 ~ 19274795 (+) True G119414
XM_036940820.1 mRNA upstream 256376 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA upstream 256376 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA upstream 256376 18995233 ~ 19000210 (+) True LOC110520830
XM_036940804.1 mRNA upstream 265219 18984795 ~ 18991367 (+) False LOC118938275
XM_036940795.1 mRNA upstream 265219 18984796 ~ 18991367 (+) False LOC118938275
XM_036940852.1 mRNA downstream 50082 19307576 ~ 19347300 (+) True LOC110512786
XM_036940854.1 mRNA downstream 135243 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 186637 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 186637 19444131 ~ 19481383 (+) True LOC110537022
XM_021622866.2 mRNA downstream 268669 19526163 ~ 19527919 (+) False LOC110537095
TU137542 other upstream 295121 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 584266 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 620545 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 779452 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 780232 18457358 ~ 18476354 (+) False LOC110536658
TU138223 other downstream 249157 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 268700 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 268700 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 419241 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 444605 19702099 ~ 19703788 (+) True G119952

Expression Profile