RNA id: XM_036940852.1


Basic Information

Item Value
RNA id XM_036940852.1
length 3134
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110512786
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19307576 ~ 19347300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatcccatCTTCTTCTTGGTAAAACAGAATCAATCTTGAAAAGAgaattccatctctccatctcttctccctcttcaccCTGTGTGGGTTAACTTAACAGATACATAGCAGTCCactcctcctctgtcttctctcGTTCTTGGAAAGCTTCAATCTCATCCCTTGTTACTTGCTCTTTTTTTGTAGGCAGCTCTTTTTCCCAGCTCTTCCTCCCTGCCACCacttgcctttctctctctctttccttcactttTTCTTTTTTGACGTGACCAGCGACAGGTTCAGAGCGATAGCAGGCTGCCTGTCAAaggaggagagataaagagagggggagaggaagaggagaagcctGCTCTTTGATCAAGTCTGTCAGCCCAAACAACCACAAATACAggCAGCATGTCTACTCCCGTGTCCCcgcccacctccctctcccccctgacCCTGGCCTCCCCCGTGGCCACCCCTGGggcctctcccctgccctcccccctcaccccccctcccAGGGTGCCAGTGTTCCAGAGGAAGGGGGCGCTGAAACACAAGAGGATCATCGAGGTCAAGGACCACCAGTTCACCGCTCGCTTCTTCAAACAGCCCACCTTCTGCAGCCACTGCACTGACTTcatctgGGGAATTGGAAAGCAGGGATTTCAATGTCAAGTGTGCAGTTTCTCTGTCCACAAGCGATGTCACGAGTATGTAACCTTCACCTGTCCTGGAGCCCCCACTGCTCCTACAGAAgacttGAAGAGTAAACACAGATTTCGACCTCAGACCTACACTTCTCCAACATTCTGTGATCACTGTGGTTCTCTGCTCTATGGCCTTATCCAACAGGGCATGAAATGCTCCTGTTGTGAGATGAATGTCCACAAGCGTTGTGAGAGCCTTGTGCCCAGCCTGTGTGGTCAAGATCATACAGAGAAGAGAGGCAGGATCCACCTGACCGTCCGGGGAGAGAACGAGGACATCTTCATCACAGTGCGGGAGGCTCGTAACCTGATCCCCATGGACCCCAACGGTCTGTCTGACCCCTACGTGAAGCTCAAGCTAATCCCTGACCCTAAGAGCCAGAGCAAACAGAAGACCAAGACTATCCGCTCCACACTCAACCCCGTCTGGAACGAGAGCTTCaccttctCGGTGCGTGGGCGGCAGTGGGACCGGCGTCTGTCGGTGGAGGTGTGGGATTGGGATCGTACGTCTCGGAATGACTTCATGGGATCGCTGTCGTTCGGAGTGAGCGAGATATTCCGTCACTCAGTTAGCGGCTGGTTCAAACTGCTGGATCAGGATGAGGGAGAGTACTACAACATGCCTGTCCCTGACGAAAATGAGCCTAGTGGTCTAGATGCtattcccccctcccttctccccccctccctgAGGCCTgcccctgtgtctgtgtctgtccctgtccccgtGTCTGTCCTGTCCCCCTCAGCCCCGTCAGTCCCCTGTCTGGCCACCCTACCTGCAGGACCGGTCAAGCCCAGGGTTTGCCTCCAGGACTTCAACTTCCTCATGGTGCTGGGAAAAGGCAGCTTCGGAAAGgtACTGCtggctgaggagagaggaagtgagcGGCTGTTTGCGGTGAAGGTGTTGAAGAAGGATGTGCTGTTCCAGGATGAGGACACAGAGAGTGCCATGGTGGAGAGGAGGGTTCTGGGACTGGCCAACCGCCCCCACTTCCTCACAGCACTCTACTCAGCCTTCcagacagagGACCGTCTCTACTATGTGATGGAGTATGTCAACGGAGGAGACCTCATGTTTCACATCCAGATAGTTGGCAAGTTCAAAGAGCCTCACGCAGCgttctaTGCAGCAGAGATAGCCATAGGCCTCTTCTTCCTCCATACTAAAGGAATCATCTACAGGGATCTGAAGCTGGATAATGTGTTGCTGGACAGTGAGGGTCATATAAAGATAGCTGATTTTGGGATGTGCAGGGAGGGCATGTTTGAAGGTGACACTACACGTACCTTCTGTGGGACCCCAGACTACATCGCACCAGAGATTGTAGCCTACCAGTCCTATGGTAAGGCAGTTGACTGGTGGTCGTATGGGGTGCTGCTCTATGAGATGTTGGCTGGACAGCCTCCCTTTGATGGTGTTGATGAGGAGGAGTTGTTTCAGTCCATCATGGAGCAGAGTGTCTCCTATCCCAAGAGTCTGTCCCGTGAGGCCGTCGCCATCTGCAAGGGGCTCCTGACCAAGCACCCAGCGAAGCGACTGggcggaggggaggagggggagaaagagatacGGGAGCATCCCTTCTTCCGTTGGATGGACTGGGACCGACTGGAGAGAATGGAGATACAGCCTCCCTTCAAACCCAGAACTggtgggAAGAAAGGGGAGAACTTTGACAAGTTCTTCACAGCGGCTCCGTCCGTGCTGACACCCTCTGACCCTGACGTTCTGGCGGCCATTGACCAGGAAGACTTCCTGGGCTTCTCCTTCATTAACCCTGAGCTCGCCCCCCCGACCCTCACTGCCATCTGAGGGGGGGCAGCTCTCTGTATTTTTATCCTCTTCTCTTGGTCTGAAGGgagcagctctgtctctctctatcctctccgtCTAACAGTCTTTTTCTAAAGCAAATTTCAAAACAGAGAATAGCACACAATTTAAACACAAACAATCAGTATACACAACCTACAGATAACTCTCCCTCTGTGCTATACTCTAGAGCCTGAGTTCATGGCTTATTTTTCAGAGGAAAATCTGTGTGATACAGGGATGAATGGGCAGATTAGCGGTAAAAGTCAAATAACACATTTAGTTGATGCAATGCATACAAAACAACATTACTGTTATTTAAAGATGATGCAGTTAATTGCGAACAGATACCGTAAGATGACACTGAATCTGACTTAAATCTGTAGTGATGTTAAGGTAAATGTATTTTATGACATGGTATCATGCTATTGTAGTATCAATATCAGATCTATTACATAGAAATACAGCTAGAGCTGTCTATATGCCAAATGTATAATCTATTACTTATGAAATGAATTACCTCTGATATTATGTAAAGCAGTATTTCTTGTGTCATGTAATGTCATATTGTGTTCTATTACATtgttctattatattattacccaACAATTG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137766 lncRNA upstream 654 19304421 ~ 19306922 (+) True G119429
TU137765 lncRNA upstream 3709 19303569 ~ 19303867 (+) True G119428
TU137762 lncRNA upstream 6519 19300736 ~ 19301057 (+) True G119425
TU137756 lncRNA upstream 15785 19291395 ~ 19291791 (+) True G119419
TU137755 lncRNA upstream 18106 19289199 ~ 19289470 (+) True G119418
TU137784 lncRNA downstream 2908 19350208 ~ 19350416 (+) True G119445
TU138214 lncRNA downstream 5127 19352427 ~ 19352718 (+) True G119785
TU138221 lncRNA downstream 43147 19390447 ~ 19390752 (+) True G119792
TU138244 lncRNA downstream 52149 19399449 ~ 19404318 (+) True G119808
TU138250 lncRNA downstream 60662 19407962 ~ 19409862 (+) True G119814
XM_036961707.1 mRNA upstream 48502 19131905 ~ 19259074 (+) False LOC110503718
XM_036940820.1 mRNA upstream 307366 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA upstream 307366 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA upstream 307366 18995233 ~ 19000210 (+) True LOC110520830
XM_036940801.1 mRNA upstream 316209 18984796 ~ 18991367 (+) False LOC118938275
XM_036940854.1 mRNA downstream 45437 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 96831 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 96831 19444131 ~ 19481383 (+) True LOC110537022
XM_021622866.2 mRNA downstream 178863 19526163 ~ 19527919 (+) False LOC110537095
XM_021622887.2 mRNA downstream 218579 19565879 ~ 19579511 (+) True LOC110537107
TU137673 other upstream 50082 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 346111 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 635256 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 671535 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 830442 18476424 ~ 18477134 (+) False LOC110536658
TU138223 other downstream 159351 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 178894 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 178894 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 329435 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 354799 19702099 ~ 19703788 (+) True G119952

Expression Profile