RNA id: XM_021623004.2


Basic Information

Item Value
RNA id XM_021623004.2
length 1329
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110537165
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19597513 ~ 19599416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggagtggaTGACCTCATTCAGGGGCAGACTGAAAGGGAGGggaagtaagagagggagagaaaatggaAGCAGTCTgctatacattttttttctccacacacaaACTTTCAAAAAGAGAAAAGACGATAAGAGCCGATGACGATCAACCGATTgggaatgagagcgagagataaAGAAATAGGGAGGAATAACACTAACCTGACACTGAGTATACTGCACAACTGATGAGAACATAAAATATTACGTGTTTGAGGCCTTGAGGCCTTTATTGACCAAGGAGAGAAAGCAGGTGGCCACTTCTGGTCCTGGAGGGTTGCAGTGTGTGCAGGCTTTTATTCCAACCCTCAGAGCCCTGACAGAGTGAGCATGTCTTCTAACTTGGACTCCAGTCTAACCAGCATAGACTGGCTCCCCCAGCTGGGAATCAGCTCACTGCgatcaggaagagagagaggaggagaagagggggagagaaagaaagagagagggagggagagaagtgatcttcctccatccatccctgtcCCCTTTCCTTCCTCTGGATCCAAAGCCAAGCCCCCTCACAGCTATGCCACCCTCATCGCCATGGCGATAGGTGCCGCCCCCGGCAGGAAGTTGAGTTTGAATGACATCTACATGTGGATCAGTGACATGTTCCCCTACTACAGCAGATCTGCCAGAGGATGGAAGAACTCCATCCGACATAACCTGTCCCTCAATAAATGCTTCCGGAAGGTTCCTCGACCCCAAAGTGACCCTGGGAAGGGTTCCTATTGGATGATGGACGGCCCCTCAGAGCCCAATCCGCTGAAAGGAACCAAGCGTCCGTATCcagctgaagaggaggaggggtccATCCAGGTCCCCAATGTCTCAGTGATGCAGGCAGAGAAACAGCATTCACCCCAGACAGACCATTATAGGTCTTTAGCATCGCCACAGACAGACCATTATAGGTCTTTAGCATCTCCACAGACAGACCATTATAGGTCTTTAGCATCTCCACAGACAGAACATTATACGTCTTTAGAATCGCCACAGGAACCCAGTCAACAACTATCCCCCCCACCATGCAAGGTAGAGTAAGTTCAGTCCCAACAAATGTATCCAGTAGATTGATAAAGATCATGGGTTTTACAACCAGATAATAAGCTGTTGTTGTCTATCACCTTGGTTCCACAGCAGCGGCCACCCTATATGCagtcccctgtctcctctcttcctgtcccccATGATACTGTCTCCCCATCTACTGCCTCTgctactctcccctctctttctatccctcattctctcccctctctttctgtccctcactctctcccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138377 lncRNA upstream 2346 19593803 ~ 19595167 (+) True G119916
TU138379 lncRNA upstream 3301 19591542 ~ 19594212 (+) False G119916
TU138367 lncRNA upstream 15139 19580821 ~ 19582374 (+) True G119909
TU138335 lncRNA upstream 34663 19552715 ~ 19562850 (+) True G119883
TU138313 lncRNA upstream 77836 19518941 ~ 19519677 (+) False G119866
TU138354 lncRNA downstream 61491 19660907 ~ 19750224 (+) True G119899
TU138347 lncRNA downstream 84377 19683793 ~ 19685529 (+) True G119893
TU138429 lncRNA downstream 111066 19710482 ~ 19713435 (+) True G119955
TU138462 lncRNA downstream 159042 19758458 ~ 19758725 (+) True G119986
TU138497 lncRNA downstream 220556 19819972 ~ 19821386 (+) False G120018
XM_021622887.2 mRNA upstream 18002 19565879 ~ 19579511 (+) True LOC110537107
XM_021622866.2 mRNA upstream 69594 19526163 ~ 19527919 (+) False LOC110537095
XM_021622737.2 mRNA upstream 116130 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA upstream 116130 19444131 ~ 19481383 (+) True LOC110537022
XM_036940854.1 mRNA upstream 163882 19392737 ~ 19433631 (+) True LOC110534362
XM_036941014.1 mRNA downstream 38018 19637434 ~ 19645326 (+) True LOC110537142
XM_036941028.1 mRNA downstream 77240 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA downstream 77241 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA downstream 77241 19676657 ~ 19683059 (+) False LOC110537226
XM_036961714.1 mRNA downstream 99075 19698491 ~ 19699519 (+) True LOC118944064
TU138236 other upstream 68853 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 69640 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 90175 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 340019 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 636048 18959136 ~ 18961465 (+) False G119245
TU138343 other downstream 77319 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 102683 19702099 ~ 19703788 (+) True G119952
TU138435 other downstream 168854 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 176044 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 176069 19775485 ~ 19778335 (+) True LOC110537243

Expression Profile