RNA id: XM_036990256.1


Basic Information

Item Value
RNA id XM_036990256.1
length 1244
RNA type mRNA
GC content 0.48
exon number 3
gene id cnp-1-2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20227621 ~ 20232215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCATCATCCCAGCTGATACACTAACATTAAACCACTGCCAAGCGAACACAAAACGCAAGAGGCAAACACATCCTTTCAATAACATcactgagagagagggacgaggagaAAAGGAGGGGCAAAGCGTGAGATAGTGATGCTTTCAGCAGGTGCCAAACAGTGAGAGGTAGCTGATAGAGAGGGAAagactgagagaaagagatgcAGCCAGCCTGTGAGAGCACACAGTGACCCACAGCATCGGAGACAAGAGAAGAAGACAGAGTTGTAGTCGTGTCCAGCCAGTCTCCTGCATTACTGTTCCTGCCCTCCCTCTACTCACTGCTGCCATGCTGTACCCACCTCTGCTCTGTGCTGCTCTGCTCCTGATAGCACCCCTGGGGCACACAGAGGGGCGCACCCTCTACCCTTCACCTGATGCCATCCAGTTTGTTGAGCAGTTTCTGGATCGCTACAACGACCTGACCCTGGATGACCTGGAGAACCTGGTGAGCAGCCAACCCGAGGAGCCCTCCTCTGCTTTTACTTCCGGGGTCAAAATCGCTGAGTACCCCAAATGGGCTGACATACCAGCACAGGGCGACAGCACCTGGCTCCGCCTCCTGAAGGGGACCCTGGCCAATCAGAAAAGAGCTGTGACGGACCGGTCGAGGAGGGGGTGGAACCGAGGATGCTTCGGGCTCAAACTGGACAGGATCGGGTCAATGAGTGGACTGGGCtgctagtggagagagaggaagggactgACGCCCCACAGGGGATATGAGGACGAACACACAGTAGGCTGCTACACAGCACACAGTCATTTACACACGTGGTGAATACAGGGATGTTAATGTGAGTACAAAGGAGGTCTACATGTAGCGTAGCTGTAGTGTACTTGCTGTAGTGTACTTGCTGTATTGCTAATGTGGTTCCATCGAGCTTAAAGAAAGTTACTCTGTATGTCTCCTGGCTGTTGGAAGGGGTTAGCTGTACTTATATTGTACATCTATTCATTTGAATCTTGAAAGTATCAAAGTTATGTTTACATCAAGCTGTTATTCTATTTTAAGTCTCTGAGTGTTGTTTTGACAGTAAACCTGCACTTTATTTAAAACTAAGTATTTAAAAGTGTTGTCTTTCTTGACTAATATTGTCCTTGTTAATCCTGCAGGAATAGTTGTTATGGCATGTTTAATGGAAATAAATatttgaaaaaaatgtaataatataatTAAAGTCCAATGTTTCTTCTCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138668 lncRNA upstream 3991 20216218 ~ 20223636 (+) True LOC110534400
TU138686 lncRNA upstream 15256 20211456 ~ 20212371 (+) True G120184
TU138748 lncRNA upstream 42213 20185173 ~ 20185414 (+) True LOC110537348
TU138730 lncRNA upstream 53140 20173740 ~ 20174487 (+) False G120213
TU138769 lncRNA downstream 36363 20268498 ~ 20270723 (+) True G120238
TU138786 lncRNA downstream 80265 20312400 ~ 20312765 (+) True G120254
TU138690 lncRNA downstream 92967 20325102 ~ 20326230 (+) True G120188
TU138795 lncRNA downstream 108839 20340974 ~ 20341290 (+) True G120263
TU138800 lncRNA downstream 122603 20354738 ~ 20355147 (+) True G120268
XR_005039497.1 mRNA upstream 18476 20208863 ~ 20209151 (+) True LOC118944184
XR_005039493.1 mRNA upstream 21595 20205740 ~ 20206032 (+) True LOC118944180
XR_005039495.1 mRNA upstream 22497 20204830 ~ 20205130 (+) True LOC118944182
XR_005039496.1 mRNA upstream 24416 20202903 ~ 20203211 (+) True LOC118944183
XM_021623354.2 mRNA upstream 26595 20197023 ~ 20201032 (+) True LOC110537365
XM_021623341.2 mRNA downstream 11295 20243430 ~ 20249298 (+) True LOC100329212
XM_036941236.1 mRNA downstream 18154 20250289 ~ 20259650 (+) False opn9
XM_021623368.2 mRNA downstream 18460 20250595 ~ 20259650 (+) True opn9
XM_036941250.1 mRNA downstream 27680 20259815 ~ 20292954 (+) False LOC110537377
XM_036941241.1 mRNA downstream 27680 20259815 ~ 20297138 (+) False LOC110537377
TU138741 other upstream 43002 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 56246 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 70517 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 202644 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 299150 19924072 ~ 19928477 (+) True G120059
TU138791 other downstream 87604 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 175727 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 668139 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 742716 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 759619 20991754 ~ 21015891 (+) True LOC110509768

Expression Profile