RNA id: XM_021623368.2


Basic Information

Item Value
RNA id XM_021623368.2
length 2738
RNA type mRNA
GC content 0.48
exon number 9
gene id opn9
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20250289 ~ 20259650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAACATACACAGTTTATTGTAACCTTTCAAGTCAGACTTGTGTGTAGGTTGACTTTAAGCCCCATAAGAGCAGGATTGAAGATCAGGTTAATGTTGTAGTTCAGTTTGTAGCCAGTAAGCTATGTATTTATTTCAACATCCCAGTGTCTATCTCTCTCACGTCATGCTCAGACAAGGCAGTCATCTTATTGAAGAGAAGACTTGTGTCTCCTGGGTGTTGTTGCTCTCATTGTTAGACACATACAAATTATGAGTCAGTTACATGTGTACTCATGTTATTATATCACAATTGGTGATATCTCTTCTACGGCATTCAGTTTAAACAATGgatagagagataaagagtgacagagatacagagagagagagaaagagagcatggaagagagagaggaagagggtgagagcatagaagagagagaaagagattgatgagagtgtgtgagagagagagagagagggaggtcaaAAAGGCTCAGATCCTTCCATTTATTTTCCCTCTGTGTGCCTTTTCGGACCACACACTCACTGATCATTTCTCCGCCAGATTGTCGACAGCAAGTTGATTTACTCTTCTCAGAAATAGAGCACAAAAATTGACAGAGGCTTAAGATTTAAAAAAGAGCTTAACTcacaacacagacagactgaaCAAAAGAGTGAGATAGGAAGTaaaaaagagaggtagagaggggcaGGTTGACCGACGAAGAGGAAGTTGATGTCTCTGGGAGGAAATGGCTCGTGGAGGGTCTCTgtcccatcctccatccctcctgccTTCCTTTCTCACCTCTCCCCCAGCACTGACCTGGGAGTTGCCATCTTCCTCATCCTCACAGgtGTAGTGTCAGTGGTTGGGAATGGCATAGTGCTGTTGGTTTACTGTAGAAAGAAGAAGAAACTCAGACCACCAGAACTCATGACTATTAACCTGGCCATCTGTGATTTTGGATACAGCCTCTTGGGGGCGCCATGCCTCATAATTTCCAGTGTGTCCCATGGCTGGGTGTTTGGGGAAGCAGGGTGCCTGTGGTACGGGTTGCAGGGCTTTGTTTTTGGGATCGGCTCCCTCATCACCACCTGTCTCATCTCTCTGGACCGCTGCCTCAAGATCTGCAGCTTCAGATACGgtCAGTGGATCGAGAGACGTCACATGTCCATGTCCATAGGGCTGGTGTGGTTCTACTCTCTATTCTGGGCCTCCCTGCCTGTTTTTGGCTTCGGCAGCTACGGACCAGAACCCTTTGGGACCAGCTGCACCATCAACTGGTGGGGGATGAGGTCATCTTTGATCGACAGGGCCTACATCTTGCTGATCCTGATCATGTGCTTCTTTCTCCCCACACTGACCATCGTCGCCTCCTACATGACCATTCTGCTGACGgtttaCCGTTCTAGTCGCGCTCTGGCATCTATTCCCTCCTCAACTGTCACTCACACCAACAAAGACCTGAGACTCACAAAGatAGCAGCTGTGGTGTGCTCCACCTTCCTCTTATCCTGGACTCCCTATGCCATTGTCTCCCTCTACTCTGCCTTGGCCCCCAAGGATGAGCATTGGGCCGGGGAGGCCATGCAGGGAGGAGGCCCCTCCATGGGGACTGGAGGATCCACCGGGATGGCCTCAGCCTTCCCAAACATCCCCAACATTATGGGTCTCCTCAATTGGACCTCCACGGAAAACTACGGAAGCAACTACGGAAGTGTCTACTACGACCCTGGAGAATCCTTGCGGGACGTGACCAACCCAGATCCATACTCCTATTCTGGCTTAGGCCACAGTCTGTCTGCTGCTTCCACGCGCAGTTCAGCCCCAGGCCAGGAGGGGGAGTCGGAGACAGGGAGCAACCGGCCGGTGTCCTGCCTGCCACCTATGGTGTCTCTGATACCAGCAATGTTTGCCAAGTCTCACTGCATGATTAACCCTTTCATCTACCAGATCATGAACAAGGAGTTCAGAGAGGACGTGTACGACATACTGTTTGGGAGACAGaacggggagaggaggagaatgcaGGGAAGAGCAGGGAGCTACTCTGACAccCCCAAAGGCAGCCTCTCCTACTGCCACAGCTGGCGAGGGAGGAGCAACCCCAAGGCCATGCCCATGGTGGAgttgggaaagaaagagagggctGGCGACACCATCTCGGTGGGGTGGGACGCCCTGGGCATGGCGTCGCTGGACACACAGGTCAACATAGACGGGCAGAGTCTgagcgaagcagggagagagctggggggtTCCACCTCTAGTAGTCTGATGAccgagtgacagagggagagatggataagAGATGTTGAGAGGATGGAGGTGTTTAGGAGCAGAGACTTCTTTAAAAACAGctttaaaataaaacatgttttgtgtAAGAACAACCAGAGTATTGTATCATAGTGAGTGTTTTGAGTAGTgactctttttttaaatgtagccaAAACATTAGTATTATTATATAACCAACAATTATGATATGTAAAATATACACTGTTGTATTTTTACATATTGTgtgtattttttacctttatatCTAAGCACCAACAAGATGTCTGCTGCAGTTTTGAAAATGGTATTCCATCTTTTAGTTTAGTCTATTTTGtagtttttttgttgtctttgtcAACACTGTCCTGATAGGCCTGTAGGTTATGGTTTACATTATAGTTTCACACAATAGAATAGTGTGTAaaattgtatgtgtgtattttgTAACAAAATAAAATCGAGCCAAG

Function

GO: NA

KEGG:

id description
K08385 OPN5; G0-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138668 lncRNA upstream 26959 20216218 ~ 20223636 (+) True LOC110534400
TU138686 lncRNA upstream 38224 20211456 ~ 20212371 (+) True G120184
TU138748 lncRNA upstream 65181 20185173 ~ 20185414 (+) True LOC110537348
TU138730 lncRNA upstream 76108 20173740 ~ 20174487 (+) False G120213
TU138769 lncRNA downstream 8848 20268498 ~ 20270723 (+) True G120238
TU138786 lncRNA downstream 52750 20312400 ~ 20312765 (+) True G120254
TU138690 lncRNA downstream 65452 20325102 ~ 20326230 (+) True G120188
TU138795 lncRNA downstream 81324 20340974 ~ 20341290 (+) True G120263
TU138800 lncRNA downstream 95088 20354738 ~ 20355147 (+) True G120268
XM_021623341.2 mRNA upstream 1297 20243430 ~ 20249298 (+) True LOC100329212
NM_001124210.1 mRNA upstream 18380 20227846 ~ 20232215 (+) True cnp-1-2
XM_036990250.1 mRNA upstream 18460 20227621 ~ 20232135 (+) False cnp-1-2
XM_036990256.1 mRNA upstream 18460 20227627 ~ 20232135 (+) False cnp-1-2
XR_005039497.1 mRNA upstream 41444 20208863 ~ 20209151 (+) True LOC118944184
XM_036941250.1 mRNA downstream 165 20259815 ~ 20292954 (+) False LOC110537377
XM_036941241.1 mRNA downstream 165 20259815 ~ 20297138 (+) False LOC110537377
XM_036941247.1 mRNA downstream 165 20259815 ~ 20297138 (+) True LOC110537377
XM_021590486.2 mRNA downstream 38836 20298486 ~ 20310775 (+) False LOC110509548
XM_036941253.1 mRNA downstream 38836 20298486 ~ 20310775 (+) True LOC110509548
TU138741 other upstream 65970 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 79214 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 93485 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 225612 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 322118 19924072 ~ 19928477 (+) True G120059
TU138791 other downstream 60089 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 148212 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 640624 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 715201 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 732104 20991754 ~ 21015891 (+) True LOC110509768

Expression Profile