RNA id: XM_036941247.1


Basic Information

Item Value
RNA id XM_036941247.1
length 6206
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110537377
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20259815 ~ 20297138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCCCAGCTCTCCAATTCTTGCAGCACTTGTTGTGTCTTGTGGCCACTTTGGAGCCAGATAAGCGTTAACGGAAGACACTggatttatttttaatacattagaGATTTGCAGCATTTAACAGTACTTTCTCTCATATAGGCTGTATACCAAAACATTACTTTTCTGAAATACATTTGAGTGTTGTCGCCTGCGCATAGCCGTCGGACCGGCCTATTCGGCATTGTTTTTTGGGGCGACCGTTATCCAGCAACAGAGCCAGACAGGAAGATCGAGGGAACTTATTCCACGAGCCTCTTTAGACCGACCGGAGATAAATCGAGGAAACATTCGTAATTAAACAGTTACGTAACCTGGTATAGGTGGAACGTCACGGATACGTCTGGTATCCAACAACAAGTCAACTTTCAGCctgtcattattttatttttgtgattttttttttacggaGAAAATTACCGTCCGTGTTCATGCCAGATCTGCAGCGCTTTAGTTTTCCATACCATAGTATGAATCCTTTGTTAGAGGCGAACTCGCTTCTCCAACATCAACAGCAGCAGAACCAAGGAGGACCGAGTCATCCGGATTCCCCCTCAGGCCTTCTACCCGAAGCCGTCTTCTGCTCGCCCGACCCGACATCTTTCTTCCTGGGCGACCATCCCGGACTGGGCTCGGAGTCTCTGCCAGGGTTCGATTTCACCACACCCTCACAAGCTTACCTGCATCTAAACCACTCTTATCACCGGTCTGTGCCCCAACGTCCTGCAGCGATGGCCCTGAGGAACGACCTGGGCTCCAATATCAGTGTCCTAAAGACTCTGAACTTACGGTTCCGATGCTTTCTGGCCAAAGTGCATGAACTTGAGCGAAGGAATAAGATTTTGGAGAAACAACTACAACAGGCGTTGGATGCGAAGAACAGCTGTGATGGAAGTTGTTCTGAAAGCGCTAGACGGGCCCATACCCAAGAAACAGGTGTACAGACCGGGTTTGTGGGAACTATCCCGCTCAGGCCCGGGTCACTCCCGTTCCAAAACACCAATAACTCTGCGAGACGACCCACTACCCTCTTCACACCTGCCCTCAACACTGTCCTCACGCTTGAGTCCAAGAACAAAGCTGAAACAAACCCCACCGAACCGAATCATAATCCGACCATCACGGTAAGCCTATCAACCCCGACAATCGACTCTCCAGCCGGGTCCAATTCAATCACCAACGGGAAAACGGTTTTCAGTACTGGCACTGGAACCCCCACCAACCCGCCTCCCCGGTTCCTCCCCGGTACTATCTGGTCCTACAACCATACCCGCAAGCTTGCTTCTGGCGTGGAGACGCGCGTCACCAGCCCCGGTGTGTCCTGGGTCCAGCCGGACGGGGTCGGGGTCCAGATTGATACCATTACCCCGGAGATCAGAGCCCTGTACAACGTCCTGGCCAAagtcaagagggagagagacgagtaCAAACGCAGGTGGGAGGAGGAGTACACTGTCAGAGTGGACATGCAGCAGAAGATGGAAGACCTACAGGAgGACCTCCAGGAGAGCGAGGGCTGTCAGGATGAGTTGGCTGTCAGAGTGCAGCAGCTGAAGTCTGAACTGGTGCTCTTCAAAGGCCTCATGAGCAACAACATGTCTGATCTGGACAGTAAGATCCAGGAGAAGGCCATGAAGGTGGACATGGACATCTGTAGACGCATCGACATCACGGCTCGCCTGTGTGACGTGGCCCAGCAGAGGAACTGTGAGGATGTCATCCAGATGTATCagGTCCCTAACACCCAGTCTGCCATCAACTGTCGCCCTCGGAAACAGACCCCGCTGTCCGTCAACAGTAGTGAGGGTGATGAGACTATCAGCACCTCGGAGAGCGATGGGGGCCTGCCCAGAGAGGAGGAGCTCTGTGGCTCGTCAGCCAATCAGATCAACGAGGAGATGCAGAGGATGCTCAACCAGCTGCGGGAGTGTGAGTTTGAAGATGACTGTGACAGCTTGGCctgggaggagacagaggagactctGCTGCTGTGGGAGGACTTCCCAGGATGCACTCTGGCTCCAGAGACCACCCACCAGCCAGGAGAGgaagACCAGTGTCTGGAGAAGGTGATTAACGACACTGAGGACTTATTCAAATCCAGGGAGAAAGAATACCAAGAGACCATCGACCAGATTGagTATGACTTGGCTACAGCTAAGAGTGATATGAACCGTCACCTACATGAATATATGGAGATGTGTTCTATGAAGAGAGGCCTGGATGTGCAGATGGAGACCTGCAGGAGACTCATCACCCAGAGTGGGGACAGTAAGCCTGGCTCTCCTATGGCTGGTGAGGAGAGCGTTGACCAGGCTAAGAAGGAAGGGACAACAGCGTCGCCTCTTCTCTCCAACTCTCCTCCCAGATCATGACCTATCAAGACAACCTCCATCACATGACCTTCATACCATCCAAACACTGTACCACGCAACACTCTACCGTCACTATAGCAACGCCATGTTTACATTCTAAACACTAGATGCTTATTAGTCTATTTTTAATTTTCTTCATGCTATCTTCATTCACATACCTCAAAATAGGAAAGTTGCAGATCTATCTGTTTTTAGCTACggtgtagtgttgtgtgtttCCAACAGCTTTTAGTCCCCTCTACTGGAAAGTGGTATTACTAGCACCATGGAAGTCTGTACATAAGAATCCACTGTTTAGCAGAGCAAAGGTAACGAGGTAATGGATTGAAATACACAACTTGAATTGAGAATACCTCATAGCAACGTATGAGCAATATTTGAATGAACTCATATGAGTTGTAGGCTAGCGTGTACTCTTAAGGTAGTTGTTGGTACTACAGAGAACCATGGTATTAACTCCTATAGCATGATCCATTTCCACACAGCCATAATgataaacacaccacacaccaataCATTCATGATAGGCTAGCATAGCAGATCATTCTAACAGTGTGCTGTCCTGTTGCAACATTGAGGGTTGTTTTCAGACTCCGTCAAACTCACCTAGATGTATAACACAGTAAATATAAGCCttagggtgtgttcgtaaattcactctggagtgccagagtgcgctctgtgcattcgtaaattcaacgctttgtcagattgtccgttggtAAATTCGTCGTGTTTCGCTCTTGGAGCGTCCAGAGCGCACGCTGGACGCTccggccgaggagtagggttgatccgagccttctgacctcacaacggcagtcaagcacccaagctaactggctaacgttggctagcttgctagctacttccagacaaaaATGAGagcacctcactctgaccattttactcaccctagcagagctggtttggctgtttacatgttatccaGAGCGCTGGTGACTAACTGtgatgctggcaacaatttaattcagCTTTTTgccgatgtttactgacaccggccctcttcaacgggtgttgagcgctgGTAAagtcatcagttattctgcgctctggcacactcagatgagagtgctttGAAATCGGAGTCGATAGCCAGAGAACACTTACGCACGCACCCTTAAACAAAGCAAAGCCCAGTTGGCAAGAGAGAACAACTCCAGATGTATCACTTTATTAGCAACCAAACAgaaatatactgtactgtatcatagTTATTCAAACGGACTAAAATAATATCAAATCACTCATTTTATCAAGACATCTACACTTCATTCATAGGTATCGATGAAAACTAGAAAAAGTCCAATCGTACACTAAACTCTAAGATGCCACCAGATGGCATCAGATGGCGTCACTGATGTCCCCTGTGTGTGATTCTGCACTCATGAGTCACATTTTGAAACAAAAGCCTGCCCGTCTCTCTGCCCTTTTGTTGACACCAGACAGGTTGTCATGGTAACATTATTTTACCGTCCTGTTTCACTTACCTGGTATTTACCAAGGAATTATTGGATAACATTGTGTAACATTGTATTCTTTCTTTAACACAACTGGTAACTAACTACCTGGTACTAAATGTTACATAGTGGTGCTTGTTTCACTGAATCCCAAAGAACCCCAAAAGTAGTTTTATTGTAATTATAATGTAATACCATTTTACTGTGTCGAGTAAAGTAAATAGGAGACTGTAACCAGAGTtaacaagaggagagaggggggagagcaagAGCAGAGTTTTTTGTTTTAGAATGCAGCCGTAGCCtagggtttccactagataacacagccacaaaatcAAAATAGGCTATATcgaaggttagcagtgtggttaagtttagggtcagattttaagaagataaattgtagaaatagacagggtttatgactttgtggttgTGTAAACTAGTGATGACCATAgcctagcctggttccagatctgtatATGTGCTTTAGTCAACTCCTCTAACTATCGTTGTCATGCCATATGCTTTTCTATGTGACTCCAGAGAGGTCATCTCTGCCACTGATCCACTTCTATCAGGGACTTTGACTTTTGTCATGGCATCTATGGTGAAATAAGTTCGCTAGAGCACATACTGATCTGGTACCAGGCTAGTCATAGGCTCTGTGTCGGCCCTATATGTGGTAGTGCAGTGTGAATAGTGTAAATACTCTGTTAAAGCTGATCTGAGGGCAGCTCTGGGGCCTtgccctgctctctgtgtctctctgtcactgACACAGGGAGAGGGATACATATGACAAAGGGCATTGACACCCAAGTGTTATTATACCTACGAGCTGTCTAATGTATACTAATGTTTTGTTTAGTTTCcagcagcagagagcagagaaagccctgctactctgtcctctaGCAGGGAGATGGGTAGGCTAGCAGGGAGATGGGTAGGCTAGCTATGATAAGTTAGATAGGCGAGCTCTATGTATCTGTTCTGTGCtctctatttctatgtctggtcTGGTTGGTAAGGACTCAATGCATCAGTAGTATTGTATCAGAGAAACGGAAGATTGATGAACAGGCTATAAAAGACAGAATGTCCACAGATGaacaaatagacagacagacagacagatagatagatggacAGATTAATGAATAGATGGATAGATTGATGACCTGCTGAGATAATTTGTGTTTGCTACTTGAGTGCCAAAGCAACTGAAAACAAGCAATCTGAATGAACTTTGAGAAATATTGCTGAAACATTGTTATAGAAGTACTAAATACTGATGCTGAAAAGCTATCTGACACGGTGCTTGATATGATCTAACCTATTTTTGAGCTTAAAAGTTAGCCGTTTATAAAGAAAGAGCAAAGCAAATATGTATATTCAATAATACAGCAGTAACAGCAATAATACGAGTATTATATGTAACAGAAAAGTAATAATgacatgtacagatgtaggatcttaatttgatcacctttGTTGCCGAGAATTTTCCTGTTCTAAAagggcttctaaagtttgtaatttccactttgaaatttcagacttgattttccctaatgaaaaatgcatcaacccatacaaaaatggccattaattataatccacaaaataaatcacatttcctgttgctgcagaattTTGTCCTAGCttaaattaagattctacatctgtaatAAGTCAAACTCGTACACGTCACGAATGTAAACAATTACTGAGGAAAACTTGTTTTATTTTCTCCACTTGTCATCTATTTGTAGATGGGGTGAAATCGCTACAGCTGAGGAGTAGATTTCCCCTATGTTAATTCAACATACACAATGTTATTATTCAGTAGAATGTAGAtgtacaatacatttttgtttgtctTCATTGACATTGAAAGATGCTTGACTTTGAATACAAAACCTCAGATAAACAATATTTAACTCAATAATAGAACACAAGGATTCCTTCACAAACACTATATCTTTATCAACAACCAAATGGAGTCCATTTCAtttgtgtttttctttttcttgTTTGATGAGGAAGTTGTTGAAACAGGTGCAGGCTGCTGGTCACACCTCAATATTGTAGAAGGGTTTCCAAGGCTTTCTCTGAACGATTATATACGTTGTGAATAACAGGTTTTGGAACCATGATTAAATGATATGCATGTCTtaagctacagttgaagttggaagtttatatacacttagattggagtaattaaaactaatttttcaaccactccacagatttcttgttaacaaactatagttttggcaagtcgattaggacatctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138668 lncRNA upstream 36179 20216218 ~ 20223636 (+) True LOC110534400
TU138686 lncRNA upstream 47444 20211456 ~ 20212371 (+) True G120184
TU138748 lncRNA upstream 74401 20185173 ~ 20185414 (+) True LOC110537348
TU138730 lncRNA upstream 85328 20173740 ~ 20174487 (+) False G120213
TU138786 lncRNA downstream 15262 20312400 ~ 20312765 (+) True G120254
TU138690 lncRNA downstream 27964 20325102 ~ 20326230 (+) True G120188
TU138795 lncRNA downstream 43836 20340974 ~ 20341290 (+) True G120263
TU138800 lncRNA downstream 57600 20354738 ~ 20355147 (+) True G120268
TU138801 lncRNA downstream 58043 20355181 ~ 20355569 (+) True G120269
XM_036941236.1 mRNA upstream 165 20250289 ~ 20259650 (+) False opn9
XM_021623368.2 mRNA upstream 165 20250595 ~ 20259650 (+) True opn9
XM_021623341.2 mRNA upstream 10517 20243430 ~ 20249298 (+) True LOC100329212
NM_001124210.1 mRNA upstream 27600 20227846 ~ 20232215 (+) True cnp-1-2
XM_036990256.1 mRNA upstream 27680 20227627 ~ 20232135 (+) False cnp-1-2
XM_021590486.2 mRNA downstream 1348 20298486 ~ 20310775 (+) False LOC110509548
XM_036941253.1 mRNA downstream 1348 20298486 ~ 20310775 (+) True LOC110509548
XM_021590448.2 mRNA downstream 29240 20326378 ~ 20337673 (+) True LOC110509528
XM_036941266.1 mRNA downstream 41114 20338252 ~ 20353846 (+) True plekhg6
XM_036941283.1 mRNA downstream 65279 20362417 ~ 20364212 (+) False LOC110509663
TU138741 other upstream 75190 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 88434 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 102705 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 234832 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 331338 19924072 ~ 19928477 (+) True G120059
TU138791 other downstream 22601 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 110724 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 603136 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 677713 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 694616 20991754 ~ 21015891 (+) True LOC110509768

Expression Profile