RNA id: TU142629


Basic Information

Item Value
RNA id TU142629
length 1893
lncRNA type read_through
GC content 0.37
exon number 4
gene id LOC110534494
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23267159 ~ 23277132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCCACCGTCTCCAAGTTGTAGCCGGATACCCTGGTCTGTCCCCACATGCACCTCCTCTGTGACATCGTTCCTTATAccactcaacccctctcccctccacccagccACCAGAGGAGCCCAAAGAGGAGGGAGGTCTCTAGGGCCGACCGGACCATCAGGCAGCCCAAAGCCCAGTTCAGCTCCACAGACACCTCCACTGAGGAGCCCACTAGTAAACATGAGTCCTCTTCAACACCACCCGCCTTGTCTCTTCGCCTTGCTCGCATCACGTTGGTGATGCCGACCATGCTGAGAGGCCCAGCTATACAGATTGGAGTGTAAGCCAACACAGCACCAGATGTAAAGACAGGGTCACCCCATGGAGAGAGGAGCCCAGCAGAGGCGGGGGCAACAGGAAAGCAGGCCAGGGGTAGTGAGAGAGGGCCGCCCTGGAGATCGtgctccatcaccctctcccatACACATTAACCTGGGACAGTTTCAGAGGTAATGTTACCGACCATGGACTCCCCGGACCCGCCCAGAACCCCTGTGTCCTCTGACTCGCCCAGATATGCGCCCCCACAGTCCCCCGCCCTGCCTCCCAGTGCACAGCAGCCCCGGGAGGTCGTAGCTCAGCTGCTGCAGGAGGCTGAAGATTCAGACGAGCAAGAGTTTAAAGACGACCCCTTACTGAATGTCTTAAGGCAGCAGAGGATGGGTGAAGGAGTAAATCAGCGAGGTGGACTCACTGTTGGATGAATTCCAGGAAGCGTGATCACTGGTGGTGAGCACACACATGGAACAAAAACAACAATCAATTCAAcagcatttttatttttgtaccgAAATATAGTGCATTTATTTTTGTTAACAAATTCTCTTTTTACAATGAATAGTTAAATATACAACAACCTTACAGTTGGGTTTTGTGAACATTCTTGATAATCTGATTGTTAACCTTTACACATGATTTAGAGGGCATTAGACACGCCACACAATCAAATCAACATTTTCAATGGTTTTATATCATATTTACAATAAATGGTTCCATAAAAATATTAAGATTGATGAGTTAAATGGGATTCTTTAGGATGAGGGATGCTTTTAAATGAGAGATCTGTCCTGTTAATATGTACAAACCTAATTTTAATGCTGTGACAGCTTAGTTAATGGGTGTTTTGGTACAGGCAGGCACCAGCTCCTTGGTGAGTGTTTGATATGTCTGTTGGAGGAGAGCGTGCCTGTATTTTTGCTTCTATCCTTATTTGGTGTGTGTACAGTTTACCAAgttaccaattacttcacactggaagaagttaagatACCCATAActacttttttattttctttaactAAAGTTAATTTGAAAAATTGCAAACTTCTTTGCGATAAACTATTTTAAATTATAAATGtcagactacaaattgcaagaacagatcactctGTAGTAAGATGTTAACAGAAAGTGTAATTTAGCATATTAAACAACTGTTTCAAATGAGAATTAGAAAGGGGTAATACTGAAAAAGGAAATGATTGCCTACTTCACCCATGTTTTCAATTTGCAAAagaagtagtgtgtagttccagtagttaactacttttttttttgctgtgtaGCAAACTACCAGATATGAACtgccaccaagctactgcaaaatgtagttaaattactagttgaactacatgtagtttaCTACTACCCCCACAACACTGGTTCCTATGGATTGTGTGTTTGTTCTTATGGTGTGTATGCTCATGATTCTGAGTGGGGCAGGTGTCTGGAGTTCTCCCCCTGCAGCATAGGGGCCGATATGATGAGGATGCCTTCAGGCGACACAGCCGACTCCAGAGCCATGGAGTCCACTCCCTCTGGAATCCTGTAGCGCCGGTTAAACTGTCGCGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142630 lncRNA upstream 2527 23267364 ~ 23268261 (+) False LOC110534494
TU142637 lncRNA upstream 10223 23260336 ~ 23260565 (+) True G123473
TU142635 lncRNA upstream 11755 23258819 ~ 23259033 (+) True G123471
TU141699 lncRNA upstream 71535 23185691 ~ 23199253 (+) True G122667
TU141666 lncRNA upstream 130244 23140052 ~ 23140544 (+) True G122637
TU142627 lncRNA downstream 3007 23280139 ~ 23281470 (+) False G123464
TU142628 lncRNA downstream 3007 23280139 ~ 23281470 (+) True G123464
TU142678 lncRNA downstream 89641 23366773 ~ 23367017 (+) True G123507
TU142679 lncRNA downstream 90364 23367496 ~ 23367957 (+) True G123508
TU142701 lncRNA downstream 100477 23377609 ~ 23390811 (+) True G123518
LOC110538320 mRNA upstream 8926 23261103 ~ 23261862 (+) True LOC110538320
XM_036942828.1 mRNA upstream 15531 23252834 ~ 23255257 (+) True LOC110538364
XM_021624823.2 mRNA upstream 18923 23246552 ~ 23251865 (+) True hsc70
XM_036942760.1 mRNA upstream 24855 23236220 ~ 23245933 (+) True si:dkey-238d18.4
XM_021625084.2 mRNA upstream 118897 23148505 ~ 23151891 (+) True LOC110538332
XM_021624580.2 mRNA downstream 5432 23282564 ~ 23343892 (+) False LOC110538034
XM_036942559.1 mRNA downstream 5432 23282564 ~ 23343892 (+) False LOC110538034
XM_036942566.1 mRNA downstream 5432 23282564 ~ 23343892 (+) False LOC110538034
XM_036942574.1 mRNA downstream 5432 23282564 ~ 23343892 (+) False LOC110538034
XM_036942588.1 mRNA downstream 5432 23282564 ~ 23343892 (+) False LOC110538034
TU141439 other upstream 459525 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 920852 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 924173 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 924283 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 1251973 22016662 ~ 22018815 (+) False G122030
TU143220 other downstream 547561 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 584785 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 584785 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 869729 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 1263872 24541004 ~ 24544226 (+) False LOC110538915

Expression Profile