RNA id: XM_021625867.2


Basic Information

Item Value
RNA id XM_021625867.2
length 2825
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110538887
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24531424 ~ 24540898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaactgggaattcgAGAAAAAAAAACGTCAGTGATCTTAAGGTCGGAATGACCGAGTTCGAGAAGGAGGCCCGAGTTCCCGGaatggaattccgagttggatgaccgttttCTCAGGCGGAGTTcgtttttccgagttcccagttgtcatgaacgcactgaagtcggaagtctgaGATTTCTGGGTTGGCTGTTGTTTGAACACTGCATCGTAAGAAAACTGGAAACGCGGGtaaatacgaggtcaaatcatgaagTCAGTGATATTCTGGTAGGAAATTTGGAGCCCTAGAAAGATGTCCGAGTTTCAgatttggaattccgagttggatgacgtTAAAAACGATTTTCACAGTTGGAGCtatttttttccgagttcccaatTATCTTGAACCCACGGAAGTCGGAGGTTTCCGAGGTCTGAGTACCAGTTGTTTTGAACTGGGCATATCTGCTGCGAACTAGTCATTGGGAAGGTCGTGCCAAACATAAATGTAGCTTTTACCACATGACAAAAACGTGGGTCACTAAAACGCCTTAAAATATGATGTGGTTACTTCAAGTATGTGCCTTTTGGATTCCGGGATTAGATTTTACAGTAGCGCGATAGCGTGCGCGTTCAGTTGAATAAAATCGGAAGCATCAAGTAACATTAGCTGACGTTAACTTCTAGCTAAATTCACAGAATAACTAGGTAAACATGAGTCCTGCTACAGGACTTCCTGCTTCTTCGGGATCCCCTGGAAGTAGCACACCTTTCTCCATAACAGGACATATCCAGCAAGTCTATAGCCATGTCAAAATAGAGAATTTGGTTGCAGGACTCAGTGGAGGAGTCGTGTCAACACTGGTGCTTCACCCTCTTGACCTAGTCAAAATCAGGTTTGCAGTGAGTGATGGACTGGACCTGAGACCTAAATATAATGGCATTATTCATTGTTTGAGAAATGTGTGGCAGCAGGAGGGGGTCCGAGGACTCTACCAAGGAGTCACCCCCAACATCTGGGGTGCTGGGGCATCATGGGGCCTCTACTTCTTCTTTTACAATGCCATCAAGGAGTACACTAAGGAAGGGCGTCAGTCTGAACTGAGTGCCACAGAACACCTGCTGTCAGCCGCCCAAGCAGgTGTATTGACTCTCACCCTAACCAACCCTATCTGGGTGACTAAGACTCGCCTGGTGCTGCAGTATAACGCTGATCCCACCAGGAAACAGTATAAAGGGATGATGGATGCACTGGTGAAGATCTACCGGCATGAGGGGATACCTGGACTGTACAGGGGGTATGTTCCTGGTTTATTTGGCACGTCACACGGGGCATTGCAGTTCATGGCCTATGAGGAGTTGAAGAGAGACTACAACAAATACAAGAAAATGCCTTCAGAAGCTAAACTGAATGCATTGGAATACATCACAATGGCAGCTCTATCCAAAATATTTGCTGTGGCTACCACATACCCTTACCAGGTGGTGCGGGCTCGCCTGCAGGACCAGCATAATAAGTACAATGGAGTCCTGGATGTGGTCAGGAGGACATGGAGGAATGAGGGAGCTGTAGGGTTCTATAAAGGCATGGTGCCCAACCTGATCCGTGTCACCCCAGCCTGCTGTATCACCTTCGTGGTCTATGAGAACGTGTCTCGCTTCCTGATGGGCCAGAAGTGAGGAGGACTAAAAAGACAGCCATGGAAGGACCACAAATAGGAAGGGACTCAGACAGTGTATGTGGTGCTAGATAAGATAAGCCATGAACTGAAGTCTCCAGAACTGTCACAGCAGGTAACTGGACAACTGGAGCAGACATGTCACCTGGATACACCTCTGGCAGCCGAGTCAAAACATGATGTTGACAATGCTGATAATtaaagactggtctctgtctcttccttggATGCATCAGAGAAGAACAGACCTCACTGGAGGTACTATACAGGACGTGGGTGTGAAACATCAAAGCAAAATGAACCATTTCAATGCTGCTGGCTGTGATgtgagtactgtgtgtgtgtgttaaacgaGCATACCTGCTATTTTCAGGGTACAAATGTACGCCcaatgtgtttttatttaatgTATTGGTGTCATACTGTAGTGCATATAATTATGTCATAGGAAATTATCACAGATGACTGATTGCACCGTTTTGAAATAATGTTAATTTCAGAAGTCTTAATCTGAAATATCAGTGTTGAATTGGCATTAGTTCATTTTCAGATAAAATGTTCTACTAAAGTTTAATGCTTTATGTTGCTTTTTCATTTCAGATCATTTTACATTTTGCTGTGTTCACTTGTCATTTCAAAACGATATGAACACATTCATTTTTTAATGAATTCACCTGGTCATGCATAAACCAATGTTCAACAAAACTTCTCTGATAGTAAAACATTTGTTAGCTTTTTGTAGCTTCAGATTACATTTAACAGCTGTCCTGTGTTCACTTTTCACTTGGAAAAAGAGATTAACACCTGCATTTCTTTATTCATTTACCTGGTAATGCATAAACCAATGTTCAAATGATGTTCTTCTCTGATAGGAAAACATTTGTTAGCTTTTTTTGCTTCAGATAAAATTTTAAAGCTGTGTCGTGTTAACTTGTCACTTGAAAAATATATCTACCCATGCATTTCTTTATGAATTCACCAATTTTCAAAAAACATATATCCGATAGGAAAACATGTTATAGTGTAATGAGTAACACAATGCATGATTCATATAATATATGACTTAATTGACAGTAATTCAAAATCTTGCCTTATTAAACAGGAATGGGACTAATGAGGAATACATCTAATTTCAGGTGGCCAATAAACTAGACCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144552 lncRNA downstream 59069 24472013 ~ 24472355 (-) True G125126
TU144549 lncRNA downstream 61440 24469753 ~ 24469984 (-) True G125123
TU144498 lncRNA downstream 110520 24406087 ~ 24420904 (-) True G125083
TU144497 lncRNA downstream 118340 24394855 ~ 24413084 (-) False G125083
TU144630 lncRNA upstream 29015 24569913 ~ 24570690 (-) True G125192
TU144658 lncRNA upstream 81505 24622403 ~ 24622633 (-) True G125220
TU144670 lncRNA upstream 92868 24633766 ~ 24685283 (-) True G125230
TU144684 lncRNA upstream 107665 24648563 ~ 24650144 (-) True G125244
TU144714 lncRNA upstream 166576 24707474 ~ 24707709 (-) True G125273
NM_001160485.1 mRNA downstream 26831 24503806 ~ 24504593 (-) True LOC100301652
XM_036943239.1 mRNA downstream 38942 24480265 ~ 24492482 (-) False LOC110538859
XR_005035966.1 mRNA downstream 38942 24480265 ~ 24492482 (-) True LOC110538859
XM_021625736.2 mRNA downstream 278323 24249862 ~ 24253101 (-) True LOC110538767
XM_021625679.2 mRNA downstream 347252 24178523 ~ 24184172 (-) False LOC110538717
XM_036943353.1 mRNA upstream 43495 24584393 ~ 24595385 (-) False LOC110538978
XM_036943349.1 mRNA upstream 43495 24584393 ~ 24601385 (-) True LOC110538978
XM_036943381.1 mRNA upstream 322008 24862906 ~ 25110554 (-) False LOC110538828
XM_036943390.1 mRNA upstream 330833 24871731 ~ 25110583 (-) True LOC110538828
LOC110533704 mRNA upstream 876542 25417440 ~ 25427699 (-) False LOC110533704
TU144456 other downstream 206588 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 261288 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 369981 24159167 ~ 24161443 (-) True LOC110538705
TU144219 other downstream 626747 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 1249626 23280179 ~ 23281798 (-) True LOC110538355
TU144748 other upstream 234322 24775220 ~ 24776627 (-) True G125305
TU146650 other upstream 2020716 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 2110478 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2730362 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 3225259 27766157 ~ 27766532 (-) True G129250

Expression Profile