RNA id: XM_036945585.1


Basic Information

Item Value
RNA id XM_036945585.1
length 2040
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110534689
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30873733 ~ 30891386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCTGACATATAGCACACTGCTTGACTCATGATAAGATCAGTAACGTGCATTATTTTTCATTTGATTGTTATTAATATTAAAAGAACAAAGTTGTTTCTGTTGAGGAGTATGCTCAAAGGACCCCGGCCTGACTGTTTTCTGTGAGATGGAATTGTTCAGGACGACAATACTTCTGCCAGTTCTGGTCCTCTCTCAAGCCTTTCTAAATGAAGACCACTCTGTTCCGGGGAACTTCTCTGGGTCGAGAGAGACTGATGAGCAGCAGACATCCAATCTAAccaTATCTCACCCCCCCAGGCTATCTCAGCACTGCTCTGGGGTTGTCGAGGTGCTCCATCGAGGGCTGTGGAGGCCAGTGACCTTTGACCTTGGGTCTGCAGAGTGGGCCAAAGTGGTGGAGGACATATGCACCAACCTGAGCTGCGGGGCAGTGTACGAGCGCCGACAGAATGGCACAGCTACATTAAACTACTCCAGCTCAACGTGTCTGAGCCAGTGTGTCTACAGAGACCTACTGGTGGAGAACTGTACAGAGCTCTCATACACAGACTGCTCTAACCTGACTGAGATAACCTGTGGGCACCAGGCCGTGCGATTGGTTGGAGGCTCACACCACTGTGAAGGACGGGTGGAGTTGTGGAGAGAGGAAAAATGGGGAACGGTGTGTGACGATAGTTGGGACCTGAGAGATGGGGGCGTGGTCTGTGCCCAATTGGGCTGTGGCTCTGCCCTGAATGTGAGCGGGCAGGACGGGTCCTTTGAAGCGGGTGTTGGTCTGGTTCTCTTAGATGAGGTGAACTGTGGGGGGAGCGAGAGGAACCTATGGGAGTGTCCCTCCATGGGGACAGTCAACGACTGTGGACACAAAGAGGACGCTGCAGTGGTTTGTTCAGGAATTCCATCTCAACCAGGCAACGAGACGGCAGAACAGAACACCCAGACTTCAACCACAGCAGACTCAGTTCTACTAGTCACCAGTGCAGAGAGCCggtcctctcctccagcagctgCTGTCTGGGGCTGCATCGCATTGTCTATAGCCCTCCTCCTCACACTCCTCTCCAATGCTTCACTCTTCCTGTCTTACAGGAGGAGAGCTGCACTTCTGGTTCACCAAAGACAAGATGGCCGCCTGCTGTCCATCCAGTCTCAACACACTGACCGAGGGGAGAGAGTCAACCTCCTCACAGTCACCACAGACACAGCTGATTACACTCCACAGTACCTTTCCCAACAACCCACTCAGAATGACACCGATGCCTCATGTGACTCTGACTATGAAAACTATGACTTCAATGACCAACCCTCTGTTGCCATGGCTACTGCACTTGTCAGGGTCCTTGACAATGGAGTAGGCACAAGCAGAGAGCCATGGGAAACCACGCAGACAGCAGAGACTTCTGACGCTCCTGAGAAATATAATATTGTTGCTGAGACAATCAACGGCATTGAGAGAAAAAACCCTGCCACCCAAAGTCTGCATTCGCTGGTGTCATCCAGCACGTCTTCTGGGGAATGCTATGAGAACATTGAGACACTGGAGAAGGAGCTGCTGGACTCAGGTCCAGATTTGAGAGAAACTGCCCTCACAGACTTGATATGTGGAAGAGAGCCATCCTTGGGATCGAGTAGTAGTACAACATCAGGGGAATCCTACTACAACGTGGGGATGGCAGTGGAACAGCATCTACAGTCAGAGAACACCTATACACATTCCCCTGTGCAATCAACCAGTGCACACCAGGATCAGCAACAGCCTGTGAACAGCAACTGCCACCTACTGAGCAGTCAAAATCAAGAAGATTCAAGCAGCTCATCTTCCTCTGAGCTTTATGAGAACATAGAAGTCCAAGATGAAGAGGGGATTGGTGATGCTACTGTGAAAGAAGACCCGGACCAGTCTCTTTCTGACAGTGACTACGATGACATAACAAATTACTAGCATTTCATCAAACATAGCAGTGAAGTGAGAACTATAAAACAGAGTCATTTACATATTAGCAGTTGTTATTATCCAGAAAGACAAACAGGAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151538 lncRNA upstream 12639 30860556 ~ 30861094 (+) True G131540
TU151525 lncRNA upstream 58400 30814506 ~ 30815333 (+) True G131527
TU151493 lncRNA upstream 111819 30747628 ~ 30761914 (+) True G131502
TU151481 lncRNA upstream 164012 30709496 ~ 30709721 (+) True G131494
TU151480 lncRNA upstream 164249 30708874 ~ 30709484 (+) True G131493
TU151557 lncRNA downstream 11418 30902804 ~ 30908231 (+) True G131556
TU151751 lncRNA downstream 164674 31056060 ~ 31056286 (+) True G131719
TU151752 lncRNA downstream 207814 31099200 ~ 31099445 (+) True G131720
TU151753 lncRNA downstream 209362 31100748 ~ 31100965 (+) True G131721
TU151765 lncRNA downstream 215455 31106841 ~ 31175978 (+) True G131731
XM_021619612.2 mRNA upstream 17687 30851297 ~ 30856046 (+) True LOC110534679
XR_005036299.1 mRNA upstream 29434 30824421 ~ 30844299 (+) False plekhf2
XM_036945604.1 mRNA downstream 245422 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA downstream 245424 31136810 ~ 31146454 (+) True LOC110486784
XM_036933421.1 mRNA downstream 307949 31199335 ~ 31202392 (+) False sri
XM_021617743.2 mRNA downstream 308060 31199446 ~ 31202392 (+) False sri
NM_001165117.2 mRNA downstream 308140 31199526 ~ 31202385 (+) True sri
TU151514 other upstream 123779 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 173110 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1083902 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1179882 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1232637 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 400084 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 469050 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 469050 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 966262 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 966300 31857686 ~ 31883073 (+) True G132342

Expression Profile