RNA id: XM_021558742.2


Basic Information

Item Value
RNA id XM_021558742.2
length 2199
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110486889
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31208985 ~ 31222079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACTTGAATATTCTACAGCAAAGCAGTGCACTCCAGAAATACATATTAGGTCGGCTCTCCAAACCATTTTGGATTCATTTGATCAGCATTTAGGAAACTTTGAGGTTAGCTACTACTGTAGTTGTTATTACAGCACAGGGTCATGGAGACTTGGGTCCTGTTGGTCTTCAGATTGTTGCTCTTTGTGCAGGCTGCACACAGCAAGCAGTCCTGCCATCCAGTGACCGTGGACTTTTGTCAAGATGTTGGTTACAACACGACCATCAATCCAACCCGCCAAACCAGGGGCTACGACCTGAGGCAGCTTCGTCAGATCGTGAAGACTGGCTGCTCTCCAGAGGTCACAGTTTTCCTATGTGGCGTTGTTTCACCTGAGTGTGTGTTGGATGACAAGATTCCACCCTGCAGTTGGCTCTGTGAGAGGGTGAAGAATGAATGTGAGCCTGTTCTAAGAGAGAAGGGTCTAAACTGGCCAGAGAAGATCAGATGTGAGGCTTACCCCAAACAATCCTGTGCCAACGGCCAAGAGAGTATCCCTGCACCAAACCCTGCAGGAACCTGTGAGCCAATCATCATCCCTCTCTGCAAGGACCTGCCCTACAAGGACACTATAATGCCCAACCTATTAAACCACTCCACACAGGAGGTCGCTGGTTTAGAATTGTATCAGTTTTACCCTCTGGTAAAGGTGCAGTGTTCTCCTCACCTTCAGGCTTTCCTGTGCTCCGTCTACACTCCAGAGTGTGTTTCAGGGAAAGCCCGCCCACCCTACAGAGCTCTGTGTGAGCTAGCCAGAAAGGACTGTGAGGTGCTAATGAACAAGTTTGGTTTTCAGTGGCCCAGTCAGTTTGAGTGTGACACCTTCGCAACGGAATCTTGTGAACATTGTGGGGTGACCAGTGCTCCGTCCCCTGAGGGCCCCTGCCAGCCAATCACCATTCCACTGTGCCAGGGCATCTCCTACAACCTGACGGCCATGCCAAATCTGCTGGGGCACAAAAAACAGGCGGAGGCGGCCGTTAAGATGGCTCAAATGGAGTATGTTTTGAAATTGACTTGTTCTGTGGATATCCGCTTCTTTCTGTGTTCTGTCTACGCTCCCCAGTGTGTGGAAGGGGAGGTGCAGCGCCCTTGCAGATCCCTTTGTGAGAGAGCCAAACTGGGGTGTGACAGTGTGTTGAATAAGTTTGGGATGTCCTGGCCTGATGATCTGAGCTGTGAATCCTTTCCAGAGGAGTCATGCGTAAGAGGGGACAGTAATCCCGAGCAACTCACGGCTGAGGAACTCCTGGTCAAGCTGAAAGAACTTGGTCACTCTGTTCGGGACCAATCACTAAGTCTTCAAACTGCCCACATATTGTTGGTTCTAGAAGATAAAGACAAATCAGGCAAACTGGATGTGAAAGAATTCCACAACCTAAAGCACTATGTGTCTGTTACCAAGAGAGAGTACTCAGAGTCCTATGAGTGGCAGAACCCAGGGTTCGTCACAGAATACCAGATGAAGAATGCCCTTGATGTCCGTGATCTTAGTTTGGACGATGAAACGTTCCAAACACTATGGCACCGGTACAGCTCTGGTGGAGGGATCAAATACGATGACTTTATGGCCATTCTCACAAGGCTCAAGATCCTGAAGGCTCGCTTTAAATCCCGACTCATTTCACCCTGTGATGCTGCAACAGACTGTGAGGTCGCCAGTTTCTCCTTCAGTCAGTTAATCCAAGTTACCATTATGTAGGCCAGCGGCAGCTGTCCAGTCACCAGCAGGAGTTCAATTGACCTGGAATGCAAAGCAATGCAGTAACCTGTTTTGGaccaaaaaaacaacattctACTGCCTTTTAGTACATACCTGTCAAAAATGATTGTCATAGTGCTGTATAATTTGTGACTGATGTCCACCTGAATATGATGGCTGTTTCCTCCTGGTCTGTTTGAATCTCTTTCTGTACATTTTCTTGCTACATTGTTTATAACACATTTACACACATATTTTGTTGGACTCAGTATTCTATCTTGCTTGTCAGTTAAACAACAAGACTAGAGACTTTCTTCTCCATATCGTCATTTTTTCTTAAACTTTTATCCCatgtttctttttctttcttttgtcTGTATACTGTCATTCAGCCTTTAGCTGCAGAGTTGTACAAGACAGCCTAACTAATAAAATATATGCCCTGGCGGATattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151824 lncRNA upstream 750 31207976 ~ 31208235 (+) True G131782
TU151819 lncRNA upstream 13262 31195378 ~ 31195723 (+) True G131777
TU151810 lncRNA upstream 20670 31188008 ~ 31188315 (+) True G131773
TU151765 lncRNA upstream 33007 31106841 ~ 31175978 (+) True G131731
TU151776 lncRNA upstream 84341 31116142 ~ 31124644 (+) True G131742
TU151836 lncRNA downstream 6094 31228173 ~ 31228578 (+) True G131794
TU151861 lncRNA downstream 27540 31249619 ~ 31249833 (+) True G131813
TU151863 lncRNA downstream 30179 31252258 ~ 31252469 (+) True G131815
TU151849 lncRNA downstream 33745 31255824 ~ 31257043 (+) False mxtx2
TU151846 lncRNA downstream 38353 31260432 ~ 31261041 (+) True mxtx2
XM_036933421.1 mRNA upstream 6593 31199335 ~ 31202392 (+) False sri
XM_021617743.2 mRNA upstream 6593 31199446 ~ 31202392 (+) False sri
NM_001165117.2 mRNA upstream 6600 31199526 ~ 31202385 (+) True sri
XM_036945604.1 mRNA upstream 62531 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA upstream 62531 31136810 ~ 31146454 (+) True LOC110486784
XM_036945721.1 mRNA downstream 34438 31256517 ~ 31261130 (+) False mxtx2
XM_021558777.2 mRNA downstream 36883 31258962 ~ 31261130 (+) False mxtx2
XM_036945724.1 mRNA downstream 36885 31258964 ~ 31261130 (+) False mxtx2
XM_036945725.1 mRNA downstream 36901 31258980 ~ 31261130 (+) False mxtx2
XM_021558792.2 mRNA downstream 36999 31259078 ~ 31261130 (+) False mxtx2
TU151514 other upstream 459031 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 508362 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1419154 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1515134 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1567889 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 69391 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 138357 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 138357 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 635569 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 635607 31857686 ~ 31883073 (+) True G132342

Expression Profile