RNA id: XM_036945725.1


Basic Information

Item Value
RNA id XM_036945725.1
length 1536
RNA type mRNA
GC content 0.47
exon number 4
gene id mxtx2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31255824 ~ 31261130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAACATATCTTAGAGCCACAAGTTATTCAGTCACAGAGACTGAGGACTAGACCAAGACTAGAGAACAACTGACACAGAGCTAAACAACAGAGAAATTTCGATGGACTGCAGCTTTGTAGGAGATTGGGCAGTGAGGAAGAGGTAATTTCCCTCCCTGATACACTTCTCTTTGTCCCATTTCCATTGGCTCCCACCTTGATGTAATCATTGGGATGCCAGAGGTCAAGACAATGCCGCACAGATGGGTGCTAGGACCATGGGGCGCAGGAAGAGAACTATCTTCACCAAAGAACACCTGAAGCTTCTGCGGGTGGATTTTGATGTTGATCCCTACCCAAGCATTGCCGTGAGGGAGTGCCTATCCCAAGCCACTGGCCTAACAGAATCCCGCATTCAGGTGTGGTTTCAGAACAGGAGAGCCAGAACAATGAAGCACAGGGACCACAAAGTCTCCCCTCAGCCAGAGTCAGCTCACCCTATCCCCAGTCCTTTTCTACCTACACAGTCTTTCTCAAAACTCCTCCATGGGATCAAAGATGTGACCCACCAGGTCGACATAGAGGAAGTCTCTTATTACCAGCCGCTGAGCCACAGCCAGATGCACGAGGAGGACTGCTTCTACGGTCCCTCATCTTGTCCCCCCACCTTCCCGCTCTCTCCAGGGGATGCTGGATACAGCAGTCCCTCATTCAGTGTGGGAGTGAGACATGACAGGTTCCTGGACACTATCTCTCCAGGTGCTTTGCCAGAAGCTCAATGGTGCAACGTTGCCCAAGAGTTCCCGTTCTGCTCCCAGGGGGAGGGCCAGGACTTCCACTACTCACCTCCGTCTGGACTTCTTCATCCCCAGTACGCCCACGGCGGACTCCAGTCCGTTCGTGCCAGCAGCACCTTCGACCCGTTCTCCAGTTGCCCTGCCACACCGGACTCAGCCTGCTGGGACATAGGACTTGAGAACCCCTATCCCATAGACCAGGGTTTCCTGTACAGGGAAGTCTCCGATGAGTACTCAAGTCCTTCTGGGTACTTTGATGCTATGCAAGAAGCCCCACTACATGAACTGTCTTTCCCAGTGGCAGGACCAGTAAACACCCCTACCATATTCTAGATCTTCAATGGCAAGGGTTGCCAACACTCCAGGTTTGAATAGGTCTAGCTCTTGTGAGAAGTAGTGCTGTTCCGGGATGGTCTCAATGAAACAAATAATGAACATTTTAATTATGTCGATGGATTTataatcaatcccagaatgagTTCGGCAACATTAAGGCATACCTGAATGTATTAGCCATGTACAATAGGACTGTTGCATGAATGAACATAGCTGCTGCGTTATGTAGGGAGGTACGTTACTACTATAATATAgggttaatttatttatttttaaaacatgtattttaccaggtgagtcagttaagaaaaacacATATTTACTGGCTATAAAGGGTGTATAATATGAGTAGAATAATACATTATGTAAAATAAATTGTCAATGTATCACTATTTATTCCAAATAAACACCTACTTTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151849 lncRNA upstream 1937 31255824 ~ 31257043 (+) False mxtx2
TU151863 lncRNA upstream 6511 31252258 ~ 31252469 (+) True G131815
TU151861 lncRNA upstream 9147 31249619 ~ 31249833 (+) True G131813
TU151836 lncRNA upstream 30402 31228173 ~ 31228578 (+) True G131794
TU151824 lncRNA upstream 50745 31207976 ~ 31208235 (+) True G131782
TU151870 lncRNA downstream 32548 31293678 ~ 31294226 (+) True LOC110534710
TU151886 lncRNA downstream 34567 31295697 ~ 31295995 (+) True G131835
TU151898 lncRNA downstream 74152 31335282 ~ 31388272 (+) True G131847
TU151939 lncRNA downstream 133959 31395089 ~ 31395472 (+) True G131886
TU151952 lncRNA downstream 170188 31431318 ~ 31431552 (+) True G131899
XM_021558742.2 mRNA upstream 36901 31208985 ~ 31222079 (+) False LOC110486889
XM_021558750.2 mRNA upstream 36901 31208985 ~ 31222079 (+) True LOC110486889
XM_036933421.1 mRNA upstream 56588 31199335 ~ 31202392 (+) False sri
XM_036945726.1 mRNA downstream 924 31262054 ~ 31294577 (+) False LOC110534710
XM_021558804.2 mRNA downstream 38872 31300002 ~ 31315913 (+) True LOC110486933
XM_021558857.2 mRNA downstream 99278 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA downstream 99278 31360408 ~ 31366322 (+) False eaf1
XM_036945732.1 mRNA downstream 328344 31589474 ~ 31624014 (+) False LOC110486995
TU151514 other upstream 509026 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 558357 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1469149 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1565129 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1617884 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 30340 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 99306 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 99306 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 596518 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 596556 31857686 ~ 31883073 (+) True G132342

Expression Profile