RNA id: XR_005036520.1


Basic Information

Item Value
RNA id XR_005036520.1
length 2070
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110488281
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34984948 ~ 35000555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAACGTCACAGCTGTTCTGGTAGCTAATCGTATGTCACGTTACTTGAACCGCAGTTGCTATCATCATAGGAGGAACTAGTTAGCTTTAAATGCCACACTGAATAATCGGTAAACACTGGTGAAATCGGAAGATTTAACTTCACAGATAGGAGCGATAAAGTAATTAAGGTAAACATAACCATGGAGGAACCAGGTGCTGATATAGAGGTGACTGTCAAAACTTTGGACTCCCAGAGTCGAAGTTACACTATAGGCGGACAGTTGACAGTGAAAGAGTTCAAGGAGCACATTGCCACTTCAGTGGACAAACAGGCTGATCTACCAGGGCCGAGTTCTGCAGGATGAGAGGACCCTGACAGTACATATCTTGGCAAATGGTACTTCATTGCAGCGGCTGGTGTGAAGGAGTCGGATGTGCAGATGTTCAGACAGATGGACAGCACTGTGTTTCACCTGAATGAGACCTCTGAAAAGGCACTACTGTTGACCGGAGCCATGCGCGTGGGTGGTCGTTGCGTTATGAAAAACTGGACCTATACTATTCAGTCTGGAAAAGATTATTTGACATCACAGGGCAGGCCTGAGCTGCAAACTCTAGTGTGGAGTGGAGAGTGGCTGAACTGCAACCAGTGTATCCTGCTGCAGGAGATGGAGCGTCACTTGGATCCACTAGAGACACACAACACCCTCAACAGATTCATTCTTTACGAGCTTTGTCATTTAAACAAGGCGTAGCACTGAGACTTGTGACGCACCAACATGAAGACACTTGACTTCCCAGATGCACTTTGGCATGAAACAACTTGTTGACCGACAGAAAGTACAGAGTAAGAATTTACTTCCTGTCTCTGTCAGAATGACTTGAGATTCTTACCTTTCTCTCACCTGTACGATGTCCATAATAGGACAGCCTCAATCTCAGCAGGACATATTTCAGTCTCAGTAGGACTTGTTTCAATAAGTTAATATAGTCACAGTACGGCTGAGATTCTATTCCCAGTGTGTTCCTCTTCATTTCAGTATAGTTTCTCAAATACCAATGCCATTTACAGTATATGAAAACATATCTTGTTAAGCCCAAGAATAGGCAGTCAAACTCCCCTGCATAATATTTCAGTACTGTCAAACAATGGTTCTTCCAGCCCACCTCTAACACAGCTGATTGTTGTTGAGCAGTTCACTAATTATATTGATGAGCAGTTCACTAGTGAAACACTAATCAGATGGTAATGCTGGGCAGAAACACCCTTTAGTTCTCCCTGACCAGGAATGGTGACCGCTGGTGTATATACCAATATTGAGCCGAACACATTCTACGATGCTGTACAGATTGACATCAATGATCTAAAACTAGACAGAAACTGATCAATGATCTAAAACTGGACAGAAACTGATCAATGATCTAAAACAGAACAGAAACAGAATAGAAACTGAACAGAACCTGATTAGATTGATGCCAGAAGGTTTCTGCTTTCAACAACAGCAGTGCCTGAACTTCTGCATTTCAGGAAGATGGGGAAAAGACTTAAAGGCTAACATGATTGAAGGCCTTGTCTGAGAACTTTGCCTGCATTGGGTAAGCACCTAAACCGTCTGTGGCATGTCAAGAAAAGCACAGGTTGATTGGGGATGCCCCATGGAGCAAGAAACCAAGAGCAGGAAAGTTACATAGAAATCTACCAACAaacgctctctccttctctcactctcactttcGCTCTCTCCACTTTCTAAAAGTTACTTTCAGTCCTGTTTATGAAATCAACAGTGTTCAACTTCACACATCTGCATTTCCATACCCTATGGCTATTTGCATACCCTATGTATCAGGAACCAAAGTAAGACctaagtgcagactgtgtgaagtaaccaTGTTtaatgacaggtcaaggcaggcacgggtcgataatccagagtgggagccaaggtacaggacggcaggcaggctcagggtaaggGGCAGGCAgacgggctcagagtcaggacaggcaatggtcaaaaccaggagggtgagaaaagagactggggaaaagcaggagctgagaaacaAAACGCTGGTtcacttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156497 lncRNA upstream 11116 34973608 ~ 34973832 (+) True G135919
TU156485 lncRNA upstream 31528 34953079 ~ 34953420 (+) True G135907
TU156492 lncRNA upstream 32093 34952517 ~ 34952855 (+) True G135914
TU156491 lncRNA upstream 32437 34952139 ~ 34952511 (+) True G135913
TU156447 lncRNA upstream 70057 34913726 ~ 34914891 (+) True G135873
TU156600 lncRNA downstream 27201 35027186 ~ 35027532 (+) True G136015
TU156603 lncRNA downstream 33920 35033905 ~ 35034771 (+) True G136018
TU156604 lncRNA downstream 35034 35035019 ~ 35035261 (+) True G136019
TU156605 lncRNA downstream 36485 35036470 ~ 35038923 (+) True G136020
TU156606 lncRNA downstream 42327 35042312 ~ 35048954 (+) True G136021
XM_021560410.2 mRNA upstream 20396 34961371 ~ 34964552 (+) True LOC110488257
XM_021560237.2 mRNA upstream 289744 34692610 ~ 34695204 (+) False arl4aa
XM_021560219.2 mRNA upstream 289744 34693092 ~ 34695204 (+) False arl4aa
XM_021560228.2 mRNA upstream 289744 34693290 ~ 34695204 (+) True arl4aa
XM_036946727.1 mRNA upstream 292662 34688109 ~ 34692286 (+) False si:dkey-30e9.6
NM_001124425.1 mRNA downstream 4595 35004580 ~ 35009706 (+) True lt-b2
NM_001124357.1 mRNA downstream 23022 35023007 ~ 35025008 (+) True tnf-alpha
LOC110533739 mRNA downstream 122818 35122803 ~ 35127514 (+) False LOC110533739
XM_021560547.2 mRNA downstream 127985 35127970 ~ 35141476 (+) False LOC110488331
XM_021560537.2 mRNA downstream 128029 35128014 ~ 35141476 (+) False LOC110488331
TU156498 other upstream 12147 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 13017 34971640 ~ 34971931 (+) True G135916
TU156107 other upstream 294002 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU155162 other upstream 1022290 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 1170465 33814033 ~ 33814483 (+) True G133760
TU156680 other downstream 151775 35151760 ~ 35153650 (+) True lypc
TU156686 other downstream 180694 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 180694 35180679 ~ 35183996 (+) True LOC110488391
TU157479 other downstream 785706 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 855164 35855149 ~ 35856400 (+) False LOC100653444

Expression Profile