RNA id: XM_021560639.2


Basic Information

Item Value
RNA id XM_021560639.2
length 6876
RNA type mRNA
GC content 0.45
exon number 4
gene id dnajc28
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35187825 ~ 35195853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACAGTTGTTCACGTTAAGTTTCTGTCTTCAGTGTGTCTGTAGTTTAAGAAAACACAGGATTAGGCAAAAACTACAACTCCCTGCATTCATTGGGAGAGTTAGCTAACAGCACCAAACAAACATGTCCGACCTCTTCTAATTATACCAAAGTGATCCGACCTGATTGTTGTCTGGCGCTGAACCTATTGGGAAATAACACTGTCTGAAACTAATGAGAAGGACAACTGTATTTTAATAAGGTGTGTGCTTCTGCGTGCCCCAGCAGAGATGAGTTACGCCATGCAGCTGTTGATTCACCGTGGGGATATCTGTCATGGCCGCATGCTGCTCCCCCTGGGCCTCCGGCCCCTTCTCCGCACGCTGAGTTCTGGTCCCCGTGTGAGCCGCAGCCTTCGGGAGAGCTACCAGCTGCTACAGCTTGAGCTTCCAGATGTGGGCGAGAGTAGCCCTGCGCAGGTGAAAGAAGCCTACCTACGCATGGCCAAGCTGTACCATCCAGACTCGGGCGCTGCTACAGCAGACGAGGCACTGTTTGCGCGGGTAGAGGAGGCATACCGCGCCGTGCTGGCGCACCAGTCCCGGCTTCAGAGCTGTGGGGGTTcgatggaagaagaggaggagaaggtgaaAGGCGTGGCTCCTCAGCACCGCCACTACCTGAGCTACGAGGGCGTGGGCTCTGGGACGCCTAGCCAGCGCGAGCGCCAATACCGTCAATTCCGAGTGGATCGGGCGGTGGAGCAGGTCCTCGACTACCGCCAGAAGGAGCATGAGACGGCGGCTGCAGCCGAGGGGGCGCTGGTGGAGAGGGATGTCCGCCAGCGCAGCCGGCAGATCAAGGTTACACAGGCAGTGGAGAGGCTGGTGGAAGACCTCATTCAGGAATCCATGTCCCGGGGAGACTTCCGCAACCTGAGTGGCGCCGGGAAGCCCATCAACAAGTTTGAGCACAACCCGTATGCCGACCCCATGACCCACAACCTCAACCGCATCCTCATCGACAACGGCTACCAGCCACCCTGGATTGTCACGCAACGCGACATCCGAGAGGACATCGCGCAGATCCGAGAGAGACTGCTGCAGGGCCAGGCGCGGCTCACCGACCCCATGAACCCCAGGGAGCATGCTCAGTGGCAGCAGCTGTGTGGGGTGGTGGCGGATGACCTTATGAAGCTCAATAAAACGGTGGATAACTTCAACCTGATTGCGCCCATGCTTACCATGCAAATGGTCCACTTCAGTTTGGAGCGTGAGATCGACCGTGCAGAGAAAGCAGCCTTTCAAGGCAGACAGGAGAgcaagagggaaagagtgagggagtgggaggagcagagaagagaaagagaaagggagcgGGAGAAGAGAGATAAGATTAAAACACATCAACACTCTTGGCAAGGCGGCCTGCTGGCATGGATGCAGAATTTACTCAAATGAGCAATGGACCTTGAAGGCAAAATTAGATAAAAAAGGATATCTCAAATCAAACTTTTATTTATAATCCATTTACACAGGTGTCAACACACTTCGAGAGGACAAGACAGAGGTGTTGAATCATTTGTCTTTTATGTCATTTTCAGTGTTTTTGCTACATTGGGTTGATTACAGTAGCATGTTATAACACACAGAATAATACAACAAGCCACTACTACAACACGGTTACTTGaccttactgtaactcaactgTGCTTTACAATAATACTACACAGTGTCAGTGTCTGGACCTCAGGACACAATGGTAATGGTATCGGACTACAATAATCCATTTAATGAAATACTTTGAATCTACGTTTATAAGCTAAGCAATTCTAATTACATTGATTTGTTTCTTTGCTGAATGAAGGAATGAAAGTATAGAATACTCAATGTTCGTTATGAATGAGCAGTTGACTGAAACTGCTCTGAACTCAAATACGGGGAAACAGAAACCACTGAAGATTTTTTCGCACACTTCCAGTCAGATGAAAATCTCTTTAAATAGGAGGTAAGCTTTCGGTCAGTCGACTGACCGAATGCTAAGCTACTATGACTGGAAGTGTGTGGTGACTTTTTCCAGTTTTGCATTTTGCCTCCCGCAACTTCACTAATCGATAATGGGTGTGCGGTAGATTCTGCCTATGATTGCATTACAATAAAAGAGGTACTGTAACTCAATCTCTCGCTCACTTGTCATTGTGACTATAATATGTTATATTAGGATTGAGAACATCAACACTATTAACTCCTCACTATCCATCCCAATCTATCCTGGGAGCTGCTCCAATGCAGCAGGGTTGCAGATGACCATGGGGTTCTTCCCGTTGTCTCCAATACGTGTGTCTGCCTCATGCAGTGCCCGTGTGACGGCCCGTGGGAGGGTGAGTCCTTTGGTCCAGTCGTGGGCAATGTACTGGTGATACGGATCGTGGGAGCTCTCTAGCTTCTTGGAGCGGATGTAGCTCAGCATGATACCAAACGTGAAGAAACTAAACATACCTACCATCAGTAGAACATACACAAATCCCTGAGCTTGAGCCTTAGGTATAGCCCCGCCCACTGGGAGAACGACCTGCTGGGTAGTGTAGTTCTGAGAGAGTACTGGGACCAGTAAACCTGTGCCGTTCAGACATTGCTGTAGGAAGGACAGCAGGAGAGTCTGCAGCTCTGTGCCATTTAAGTGCAGCATTGCTGATCTCTGCTGGTTGTGGAAGGGAACTGCTGCTCTTGTCAACTGATGAGGGAGGAGAGCCTTGGTCAGTACACTCGCCCAATgagacacaaacaaaaacacacattgcAGAAAGTCTAACACAGACACGGCACAGCCAATATGACAAACACAAACTAATGCTGCGGAACTCACTTCTCTGTTCTCTTGCTGTGGATAAAAATATTTTATCTCTAGTTGCTCCGATGGCTTCTGCCTCAGTTTCTGTTGACCTGCCTGAGAAAACTTGGTATTACACATCTAAGATACAAGTGTAGGACAAATTATCAATCACAGAAGAAATATGTAAAATGAAGAGTGCAAATACCTTTGGAAGCTCTCTGTAATTGTTGCTCACAAAGGTGCTAGTAGAAGATGGTGACCTTTTTAAATAGAGTACTCCGTTGATTTCCGTTGATTTCGAGGGGAAAAACTGTAAGGTAATCTGGTTCCACCTACACTTCCACTCCAagacttctctttctctcgctctctctctcgctctgtctctctctctccctcacacacatacacacacacacactgacggaCACATGAGCTTAACCACGTCAACACGTTTAATGAGCCATAGATGTCATGTCAGAGGTCAAGGTCAGAACCTCCCCATGGTATGGTAGTGGGGCTGTGTGATTTACTGTTATGACCGCAGGACACTGTGGTTCAGTTACGGACACTTCAGTACAGTTAAACCTGTGTGGTAATAACTCTGCTATAGTTGTCTCCATAGCTATGATCACCTGGTCAACATGCTTCAGTGTTGTAAGGTGTATGGTCAGTTTTGTGGTCACTTCTGGATTGTCATATCTGTATGTATGGTCAGTCTTACGTTCATGTGTGGTTGTGATGGAGCTAGGTTGTAGAACAAAGCGGCATTCAGACTGGAGGGAGAGTGGCGAGATTAAGTTACAACAGGAGCAAATCACAAATCACCTCCAAACGTCCTAGCTATCCCACTGCTtttccgtgtgtgtgcgtgcgtgcatgtgtgtgttacctagagACTCACCTTCAGGGGCCTAAGCAGTCCAGCGAACATTCAGCATTGCAGACAGAATGAACAACATATAATTGTGTCAATAGTCCATTCTGCATGATAAACATGTCCCAGTGACTAGACCCTAGGCATTCTGCATCTAAGGAGTCCTTGGGACAATCTCATAATTTGACTATGCCTTTAGATGTTTGGTGTAAGCCTATACAAAACAAATATCCTATAATCCTGTTGTATCTTTTTCTATGACCTCTGAAATAATTGTATAACTTATCATTATTGATCATATCTTACTATTGCTGCGATGAATATCAAGGTTGCGTGGTCTAAATTCTCATCCGTTAGCAGAGTTTGCCACCAGCTGGCCATTTTGGATTAGTTTGTGACAGGACCGCTGGCTCTGTTGCAAATGTTCCATTCAAGACGGATACATCCTTCAAACACAAAAGGAAAAGTGCCGAGTTTGTGAGCACATTCGATTTGATTTTCCTTGCTCCATATATGACATTTAACATTCTGCCTACAAACACTATAAAGAAATATACAGTGGCGGGTTTAAACGATCAGACTCAACATTCATTACATTCCTATAGGTTGATCATGTCAaatgcagtttttttttcttcatcgctttggtactattttcacaaGAGTGTGATGAAATTTCACAACTCAAAACAGATCATCGAAAAggctgttttttttccccctcaaaacattaagcacattttcaattgactaagtAAAACAATCTTAACAAGTGACCTTTTCACCAAACCTAAATCCgtgtttcatctagaaatacctttcatataaagtaattgcctttcacaatgcaatgTGCTCACAATACTTTTAATATGACCCTCTTCTCATTTGTGTAATGAATACGATGGGAGACAGAATGCTGGTTtaaagcgcagggcgcagcaggtgtttaattgtaaaggaccacaggaagaggcaggtagctgggtccaggggcaggcagaaggtcatacacaggggctccaaaaaggtaacagtacaggcagggaaaggcTAATAACGTAGTCCAGGATCAGGCAAGAGGTTGATGACAGGAAATCCGATAGGAAAAAGGTCAGGCAGGGAATAGGTAAATAGGCGTCGTTAGTGAGGATGGCCAAAAAACATATTGGCATTAAATGGAGTCGGGAGTTTAGAAGACTGCGCGATGTAGAATGAATGAGAACCCTAATTCGTCCCGTGTTACATCTCCAATTTGCCGCGGGCGTCTGGTACTCTAAAAGGTTGGACAGGGTTGGCAGGTCTGAAATACAGTTGACCATCACTTAATCTAACTGCGCTTAATGGTTAACCACTTAACCGTTTGGTACCCTATAGATTTTAAGATTTTGTCAACTATATATGGATTTTGAGAACTACAGAAGTAAAATGTctgtaaagtataaacatctaaattACATGTATcgtacatgataaccatacataatgactactcaTTATTGCTAATTGATTTCACATAGTGTTAACCACAATTGGTCACCATATAAAAGGGTGGGTGTCAACATTCGCAATTTCTTTCAACGTGGAGCAGGATAGACagcaagggagaggaagaaatcagagaggtgggcatggaccctatcaaagaggtcaaagaggtggatATGGGCCCCATCTAAGAggtggacaacagagagagggtaGCAGATGGCAGGGAACTGTTGTCTAGTGAAATCCGGGCCATCGTCGTTGACCATGTGGTAAACAGAGGCCTTACTATGGCAGAGGCTGCCAGATTAGTTCACCCTAATCTGAAAAGATCAACTGTCAATTTGATCATGAGAACATTTTGCCAAGAAAACCGGTAAGTTTGTAGGATATGCACCATTACATTTACAGCAAGTTACATTACAATATGTATGTAAATTCACAAAACATGTTACAGTATTCTTACAGTATGATCTATTGACAGTACACACCGTTCTACCCTCAGAATTGACAGAAGACCCCATGGGGTGGCTGTGGCCGTGTGCTGACAGACGAGCAGGAGTGCGCAGTGGTGGAAATGaagaaaaccgtaacataaCTGGTGACTTTTGAGAGAAAAAACGACCGGGTTTAACAACTGCAGCCGAGTATGCTCAGtggGTGATGGTGCTTGATGCTGCTGTGAACCATAACTCCCCCGCAACTGCCGTGCAGAAATAACAGCCCACAGACAGAAGCACAAGATGGAACTTCACTCAATTTTcaagagcagtggtcaccaatgGTTGATCTCCAAACATCTCAGGGTGCTGGCGGTAGGTGCACCCCGTTTACGAGGTGGGTAGGTGAACTGCTGCTATTTTGAACCATtacatgtgtctgaaggtacaaactctgccttTCCGgcgggcccagagagcaaatcaattGCGCTATAggtctaccgctggccaatcagatggcCGCGTCTGTAGTAacatagcaggcataaaagaaagctacagcaaagttgatactgtgagatttcaaaacatttaaaccatgactagagagagagactgtcaatgaACACAGCAAAGATATGCTGTTTATGTTCTTACTAAttactgtcaacactttgtattcaacattttTATAAGGAATAAAATGCTAATTCTTCCAATTTctactcagcactacaacaagcATTGCAGCAGTAAcgaatgagtaggaaagtgtatctataggcttgcgttgttattattagcggcttgggCTTTTTTTTATATAACAGAATATTTCAccttctctgttcataggagtaacagCATGAATTTGTGCATAAGGCAGTGTAACTCGAGTTtagccatcagctggaagacggtgtccctttttggtcaatGTCAGTGGAAACTCACATAGGATGTACCCGTGACTagaactattcaacgctggtctgaccaatcggaatcgacgattcaagattgttttgatcacgcgaactgggaaatgttccgggcagcctcagagaataacatcgattttatacgctgatttggtgagtgagtttataaggaagtgcattggagatgttgtacccagtGTGACTATTAAAACATACCCTAACCAGAGACTGTGGACGGATGGCGGAatttgcacaaaactgaaagcacgaaccactgcatttaaccatgtaaagatgactgggaatatggccaac

Function

GO: NA

KEGG:

id description
K19373 DNAJC28; DnaJ homolog subfamily C member 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156684 lncRNA upstream 29788 35157832 ~ 35158037 (+) True G136086
TU156677 lncRNA upstream 42379 35143735 ~ 35145446 (+) True G136079
TU156665 lncRNA upstream 63760 35123857 ~ 35124065 (+) True LOC110533739
TU156663 lncRNA upstream 64750 35122850 ~ 35123075 (+) False LOC110533739
TU156649 lncRNA upstream 85750 35101843 ~ 35102075 (+) True G136055
TU156696 lncRNA downstream 3489 35199342 ~ 35200486 (+) True G136097
TU156706 lncRNA downstream 37341 35233194 ~ 35239050 (+) False LOC110534843
TU156701 lncRNA downstream 37934 35233787 ~ 35238941 (+) False LOC110534843
TU156704 lncRNA downstream 37934 35233787 ~ 35238941 (+) True LOC110534843
TU156757 lncRNA downstream 93524 35289377 ~ 35289644 (+) True G136144
XM_021560627.2 mRNA upstream 3823 35180650 ~ 35184002 (+) False LOC110488391
XM_021560632.2 mRNA upstream 3823 35180650 ~ 35184002 (+) False LOC110488391
XM_021560615.2 mRNA upstream 7359 35172574 ~ 35180466 (+) False LOC110488375
XM_021560610.2 mRNA upstream 7359 35172575 ~ 35180466 (+) True LOC110488375
XM_036946906.1 mRNA upstream 34190 35151801 ~ 35153635 (+) False lypc
XM_036946933.1 mRNA downstream 9328 35205181 ~ 35239245 (+) False LOC110534843
XM_036946942.1 mRNA downstream 9331 35205184 ~ 35239245 (+) False LOC110534843
XM_036946949.1 mRNA downstream 9946 35205799 ~ 35239245 (+) False LOC110534843
XM_036946947.1 mRNA downstream 19057 35214910 ~ 35239245 (+) False LOC110534843
XM_021560689.2 mRNA downstream 98246 35294099 ~ 35307452 (+) True LOC110488465
TU156686 other upstream 3829 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 3829 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 34175 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 187270 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 191029 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 589838 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 659296 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 659375 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 786979 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 903758 36099611 ~ 36100277 (+) True G137058

Expression Profile