RNA id: XM_021561486.2


Basic Information

Item Value
RNA id XM_021561486.2
length 2705
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110488976
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37347656 ~ 37396662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagtacagtccGAAGGTTCGAAGTCAGAGGGAGGAGATTTTTCTCCAATATCGGGGCGGGGTCTTGTGACTCACCATCAACTTCCTCATAGACAGTAGGGCCGGTGAACTGTGTTACACTTCAACATTGTACAGTTAGAGGTCTGAGTAGACTGCAGGGAAAAGGAACGGGAAAAATTGTACAGTATAATAATCTGCCACTGGAGTAGCGACCGGCAGAAATTCACATCGTTTGAATGTCTGGTGACACAGCGCGAGAGGTGGGCTTCGATTGTCAAGTCGCAAAGGTGCATTCAACAGCAGATATAACGTCGGGGATGGAACAAGTCACAATGAGCGACCGGTTCGACTGCGACAACTGCAAGGAGTCCCTATACGGACGCAAGTACATCCAGgcagatgggggagagggggacaacCCCTACTGCATCCCCTGTTACGACAGCCTGTTCGCCAACACCTGCGACGAGTGCAAGGAGCTAATAGGCCATGACGCCAGGGAGCTGTTCTACGAGGACCGGCACTACCACGAGCACTGTTTCCGTTGTTTCCGCTGTGACCGCTCGCTGGCGGACGAGCCCTTCACCAGCCAGGACGAGGCGCTGCTGTGTAACGACTGCTACTGCAATGAGTTCTCATCCAAGTGTGTGGCCTGCGACAAGACCGTCATGCCAGGCACAAGGAAGTTGGAGTATGGTGGCTCCACATGGCACGAGGGATGTTTCATCTGCCACAGCTGTGAGCAGCCCATCGGCTCCAAGTCCTTCATCCCAGACAAGGATGAACACTACTGTGTGTCCTGCTATGAGGACAAGTTCGCCCCGCGCTGCACCCGCTGCAAAAAGgcCCTGGCTAAAGGGGGCGTGACGTATCGGGATGAGCCGTGGCACAAGGAGTGTTTTGTGTGTTCGGGCTGCAAGGTGCAGCTGGCAGGGCAGCACTTCACCTCGCGCGAAGACAACCCCTACTGCCTCAAGTGCTTCGGCAGCCTATACTCCAAGAAGTGTGAGGCATGCAGCAAGCCTATCACAGGTTTTGGCGGAGGGAAGTACATCTCGTTTGAGGAGCGCCAGTGGCACCAGCCCTGCTTCACCTGCACAGAGTGCTCGGTCTCTCTGGTGGGGGCGGGCTTCTTCCCCAATGGAGACCAGATCCTGTGTCGCGACTGCAACACCAATAGCAATCTATagaccacacacagacaccgtaTCGCccctctcctcacacacacacctaggtcAACCCCAGGGCCCCCCATCACTGCCAAGGTTGTTAACACAGACTGCCTCTCAGGTCATGCCAACACACACAACTTGCTCACTAGACCACAGCTCGATCCCTCATCCTCCCCCAGAGCTTTCTGTTGCTTGCTGTCAAATACCAGAGCTAAGCATCAGGCTACTGaggcacagacagacaaaaaTCAGCCAGACTAAGGTTGATCTAACTTGGCAGAGGCACGTTTTCATTGTCTTCTTTGCCAAATAGACCTACTTTTCCTTCACCTGTATGTATGAGTGACTTTTAGGTCAGATTATGTTTGGTTTAACAGAGGAAAAAGTCTTATCTTTGAACAGAACTGAACCGTTATGAACGATTAACTGATTAGTGGTGTCATTTGATGGATTGCCAATGATCTACCAAAGAAATGTACTATCTGCCATCAAAGAATTTAACTGGTATGGGGGAAAACCATGGTTCTGAATTCACTGAAGAATTTAATTCCAGTATCACTACTCCAATATGCTGTATTAGAGGCTATAGCATTTTAATGTGAGGATAACATTGACCAATGTGCAAATTGTCCTTCGAACATTGGCTGAAATCATACTATTTTTGATGTAGTTGCTAtctagactggagaggggagatcCACTCCAAGGCTTTCATTCTCCACAATAAGTTGTGACTGTGGGAAAGTtatgtgcctttaaaaaaatgcCATACTTTATATAGTATGTATTATCAAACCAAAGAAAAGAGAAATGCTTACAGCTATGCATACTTTTTGCTAGATTTTTTTTGTATGAACGCATCACCACTAATCTATGAATGCAACACTTTGCAAAGCAGCCACAGAACACTGATATTTACTACATTGTAAATATGTTATGCAAGTAAAATACGTTTGAGTGATTTCAATGCTGATAATTGCAGTTTTGTGACATACGACTGTTCTCCTGTGTCAATTAGGTTTCAGAGCAGTATTTGCTGTCATGCTTTAGTTGTTACTTAACCTGTAGTCGTATCATGATTTATTTGAAGAGAATAATATGTTGCAGTGGTTTGTTTATGCAGTTGTCAAACACTTTATAGTATCCCGAAGAATAGGTCCAAGAGATGAAGAAAAAAATAGAAATTGAGAGAACGTGAAAAGAAAGAAAGCTTGGTGTACTGGAGAAAACCAATGAAGTCAGTTAAGACATAAGGAAAGCGTTGTCATGTATTTGCACTATGGCTAAAATATTCCCCGTGCTCCCAGAATTTGTGAACATACAAACGCAACTCGAGCATTTTATATATGGGGCAACACCTAAACCACTCTTTGCCTTTTTTAAATAACTATTGTTTACTTTTTTTCCATATTGACACTTATCTATGATGTTTTTTTGTCAAGCATATTTCATTTTTTCGCCTTTGTATTTAATCTTTCTGTTACTATCGCTGTCGTTTGATAATAAATGGGCTAGTCCCAAAGAAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159332 lncRNA upstream 6445 37340956 ~ 37341211 (+) True G138522
TU159311 lncRNA upstream 10582 37336079 ~ 37337074 (+) True G138501
TU159325 lncRNA upstream 23760 37323684 ~ 37323896 (+) True G138515
TU159313 lncRNA upstream 41977 37305447 ~ 37305679 (+) True G138503
TU159163 lncRNA upstream 161258 37186148 ~ 37186398 (+) True G138367
TU159368 lncRNA downstream 4145 37400807 ~ 37401048 (+) True G138558
TU159376 lncRNA downstream 11307 37407969 ~ 37408189 (+) True G138566
TU159380 lncRNA downstream 14243 37410905 ~ 37466211 (+) True G138569
TU159434 lncRNA downstream 100746 37497408 ~ 37497640 (+) True G138621
TU159435 lncRNA downstream 101956 37498618 ~ 37498959 (+) True G138622
XM_021561460.2 mRNA upstream 69631 37274322 ~ 37278025 (+) True LOC110488961
XM_021561449.2 mRNA upstream 401562 36927068 ~ 36946094 (+) True LOC110488952
XM_021561423.2 mRNA upstream 425398 36919644 ~ 36922258 (+) True LOC110488936
XM_021561393.2 mRNA upstream 432047 36907417 ~ 36915609 (+) False LOC110488922
XM_021561508.2 mRNA downstream 175742 37572404 ~ 37603294 (+) True gnl2
XM_021561519.2 mRNA downstream 210431 37607093 ~ 37621875 (+) True LOC110488991
XM_021561532.2 mRNA downstream 231490 37628152 ~ 37664293 (+) True LOC110489000
XM_036947634.1 mRNA downstream 302553 37699215 ~ 37763715 (+) False LOC110501519
XM_036947642.1 mRNA downstream 302553 37699215 ~ 37763715 (+) False LOC110501519
TU158176 other upstream 945685 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 961800 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 1247379 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 1309915 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1491256 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 380399 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 380399 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 380399 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 380399 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 380399 37777061 ~ 37824010 (+) True G139004

Expression Profile